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Found 5901 results for class "Irradiation". Showing entries 1-20.
| Graph | Cluster | Transcripts | Mean logCPM | Classification | Smed/Human type | Human gene | Annotation |
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MligTCv3c-562.8993 | Mlig018268.g1, Mlig029401.g1, Mlig018268.g2 | 9.58 | Irradiation |
Mlig018268.g1 {Length: 649} {SignalP} {Pfam: Carbohydrate binding [PF10645.7, score=36.6]} {RNA1509_829} Mlig029401.g1 {Length: 649} {SignalP} {Pfam: Carbohydrate binding [PF10645.7, score=36.6]} {RNA1509_829} Mlig018268.g2 {Length: 525} {SignalP} {Pfam: Carbohydrate binding [PF10645.7, score=36.6]} {RNA1509_30, RNA1509_379, RNA1509_457, RNA1509_829} |
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MligTCv3c-12991.1 | Mlig001299.g5 | 9.54 | Irradiation Int S/G2/M S/G2/M, no gonads Neoblast Neoblast, stringent |
Gut; X1 | PPIA | Mlig001299.g5 {Length: 991} {TRANSSPLICED} {Pfam: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD [PF00160.19, score=171.5]} {Human: ENSG00000196262, PPIA, peptidylprolyl isomerase A (cyclophilin A), [Score=187, Expect=1e-60]; ENSG00000108179, PPIF, peptidylprolyl isomerase F, [Score=186, Expect=3e-59]; ENSG00000084072, PPIE, peptidylprolyl isomerase E (cyclophilin E), [Score=180, Expect=7e-56]} {Dmel: FBgn0004432, Cyp1, Cyclophilin 1, [Score=191, Expect=1e-61]} {Celegans: WBGene00000879, cyn-3, Caenorhabditis elegans Protein CYN-3 (cyn-3) mRNA, complete cds., [Score=210, Expect=6e-70]} {Smed: dd_Smed_v6_1508_0_1, [Score=199, Expect=8e-66]; dd_Smed_v6_457_0_1, [Score=193, Expect=2e-63]} {Smes: dd_Smes_v1_21527_1_1, [Score=197, Expect=7e-65]; dd_Smes_v1_11388_1_1, [Score=193, Expect=2e-63]} {Smans: Smp_040130.1, [Score=181, Expect=7e-59]} {UniRef: UniRef50_A0A1I8F584, Peptidyl-prolyl cis-trans isomerase n=1 Tax=Macrostomum lignano TaxID=282301 RepID=A0A1I8F584_9PLAT, [Score=249, Expect=4e-83]} {RNA1509_23446} {WURTZEL: Gut [dd_Smed_v6_457_0_1, peptidylprolyl isomerase A (cyclophilin A) (PPIA)]} |
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MligTCv3c-8933.0 | Mlig030334.g8, Mlig030334.g3, Mlig030334.g5 | 9.2 | Irradiation Int S/G2/M Germline |
Mlig030334.g8 {Length: 1665} {SignalP} {RNA1509_14264} Mlig030334.g3 {Length: 1665} {SignalP} {RNA1509_14264} Mlig030334.g5 {Length: 1662} {SignalP} {RNA1509_14264} |
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MligTCv3c-6023.1 | Mlig028529.g2, Mlig028529.g1 | 8.91 | Irradiation |
Mlig028529.g2 {Length: 825} {Pfam: EF-hand domain [PF13405.4, score=28.2]; EF hand [PF00036.30, score=26.4]; EF hand [PF13202.4, score=24.5]; EF-hand domain pair [PF13499.4, score=22.7]} {RNA1509_194, RNA1509_2542, RNA1509_298, RNA1509_3622, RNA1509_5624} Mlig028529.g1 {Length: 825} {Pfam: EF-hand domain [PF13405.4, score=28.2]; EF hand [PF00036.30, score=26.4]; EF hand [PF13202.4, score=24.5]; EF-hand domain pair [PF13499.4, score=22.7]} {RNA1509_298} |
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MligTCv3c-17688.1 | Mlig001691.g1 | 8.72 | Irradiation Int S/G2/M Germline |
Mlig001691.g1 {Length: 1249} {Pfam: Protein of unknown function (DUF3540) [PF12059.6, score=19.1]} {RNA1509_1402, RNA1509_1798, RNA1509_18815, RNA1509_19310, RNA1509_19876, RNA1509_2116, RNA1509_2178, RNA1509_33453, RNA1509_4048, RNA1509_47, RNA1509_51669, RNA1509_517, RNA1509_52628, RNA1509_7956} | ||
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MligTCv3c-14979.1 | Mlig011207.g5, Mlig011207.g4, Mlig011207.g1 | 8.71 | Irradiation |
X1 | Mlig011207.g5 {Length: 2244} {Pfam: Hsp20/alpha crystallin family [PF00011.19, score=96.3]} {Celegans: WBGene00008591, F08H9.3, Caenorhabditis elegans Protein F08H9.3 (F08H9.3) mRNA, complete cds., [RH, Score=50.8, Expect=6e-08]} {Smed: dd_Smed_v6_1039_0_1, [RH, Score=80.9, Expect=6e-18]} {Smes: dd_Smes_v1_40328_1_1, [RH, Score=81.3, Expect=7e-18]} {Smans: Smp_049300.3, [Score=45.4, Expect=8e-06]} {UniRef: UniRef50_UPI000779F293, UPI000779F293 related cluster n=1 Tax=unknown TaxID= RepID=UPI000779F293, [Score=73.2, Expect=4e-13]; UniRef50_H9LIX5, Small heat shock protein (Fragment) n=1 Tax=Crassostrea ariakensis TaxID=94323 RepID=H9LIX5_CRAAR, [Score=72.8, Expect=4e-13]} {RNA1509_1006, RNA1509_58} Mlig011207.g4 {Length: 1626} {Pfam: Hsp20/alpha crystallin family [PF00011.19, score=97.9]} {Celegans: WBGene00008591, F08H9.3, Caenorhabditis elegans Protein F08H9.3 (F08H9.3) mRNA, complete cds., [RH, Score=52.4, Expect=2e-08]} {Smed: dd_Smed_v6_1039_0_1, [RH, Score=81.3, Expect=5e-18]} {Smes: dd_Smes_v1_40328_1_1, [RH, Score=81.6, Expect=5e-18]} {Smans: Smp_049300.3, [Score=48.1, Expect=9e-07]} {UniRef: UniRef50_H9LIX5, Small heat shock protein (Fragment) n=1 Tax=Crassostrea ariakensis TaxID=94323 RepID=H9LIX5_CRAAR, [Score=75.9, Expect=4e-14]} {RNA1509_1512} Mlig011207.g1 {Length: 1622} {Pfam: Hsp20/alpha crystallin family [PF00011.19, score=41.6]} {Celegans: WBGene00008591, F08H9.3, Caenorhabditis elegans Protein F08H9.3 (F08H9.3) mRNA, complete cds., [RH, Score=53.1, Expect=6e-09]} {Smed: dd_Smed_v6_1039_0_1, [Score=65.5, Expect=7e-13]} {Smes: dd_Smes_v1_40328_1_1, [Score=65.9, Expect=7e-13]} {UniRef: UniRef50_G3GAE5, Small heat shock protein 24.1 n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=G3GAE5_MYTGA, [Score=60.8, Expect=7e-09]} {RNA1509_1512} |
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MligTCv3c-12244.0 | Mlig000508.g11, Mlig000508.g1, Mlig000508.g12 | 8.45 | Irradiation Int S/G2/M S/G2/M, no gonads Neoblast Neoblast, stringent |
X1 | SERBP1 | Mlig000508.g11 {Length: 3847} {Pfam: Hyaluronan / mRNA binding family [PF04774.13, score=71.1]; Intracellular hyaluronan-binding protein 4 N-terminal [PF16174.3, score=39.6]} {Human: ENSG00000142864, SERBP1, SERPINE1 mRNA binding protein 1, [RH, Score=63.5, Expect=3e-10]} {Dmel: FBgn0024183, vig, vasa intronic gene, [RH, Score=66.6, Expect=2e-11]; FBgn0046214, vig2, vig2, [RH, Score=65.5, Expect=4e-11]; FBgn0265047, fdy, flagrante delicto Y, [RH, Score=64.3, Expect=6e-11]} {Smed: dd_Smed_v6_697_0_1, [RH, Score=64.3, Expect=4e-11]} {Smes: dd_Smes_v1_42272_1_1, [RH, Score=64.3, Expect=5e-11]} {UniRef: UniRef50_K1RAY9, Plasminogen activator inhibitor 1 RNA-binding protein n=2 Tax=Crassostrea gigas TaxID=29159 RepID=K1RAY9_CRAGI, [Score=86.7, Expect=7e-16]} {RNA1509_35575} Mlig000508.g1 {Length: 3849} {Pfam: Hyaluronan / mRNA binding family [PF04774.13, score=71.1]; Intracellular hyaluronan-binding protein 4 N-terminal [PF16174.3, score=39.6]} {Human: ENSG00000142864, SERBP1, SERPINE1 mRNA binding protein 1, [RH, Score=63.5, Expect=3e-10]} {Dmel: FBgn0024183, vig, vasa intronic gene, [RH, Score=66.6, Expect=2e-11]; FBgn0046214, vig2, vig2, [RH, Score=65.5, Expect=4e-11]; FBgn0265047, fdy, flagrante delicto Y, [RH, Score=64.7, Expect=6e-11]} {Smed: dd_Smed_v6_697_0_1, [RH, Score=63.9, Expect=4e-11]} {Smes: dd_Smes_v1_42272_1_1, [RH, Score=63.9, Expect=5e-11]} {UniRef: UniRef50_K1RAY9, Plasminogen activator inhibitor 1 RNA-binding protein n=2 Tax=Crassostrea gigas TaxID=29159 RepID=K1RAY9_CRAGI, [Score=86.7, Expect=6e-16]} {RNA1509_30110, RNA1509_7006} Mlig000508.g12 {Length: 3847} {Pfam: Hyaluronan / mRNA binding family [PF04774.13, score=71.1]; Intracellular hyaluronan-binding protein 4 N-terminal [PF16174.3, score=39.6]} {Human: ENSG00000142864, SERBP1, SERPINE1 mRNA binding protein 1, [RH, Score=63.5, Expect=3e-10]} {Dmel: FBgn0024183, vig, vasa intronic gene, [RH, Score=66.6, Expect=2e-11]; FBgn0046214, vig2, vig2, [RH, Score=65.5, Expect=4e-11]; FBgn0265047, fdy, flagrante delicto Y, [RH, Score=64.7, Expect=6e-11]} {Smed: dd_Smed_v6_697_0_1, [RH, Score=63.9, Expect=4e-11]} {Smes: dd_Smes_v1_42272_1_1, [RH, Score=63.9, Expect=5e-11]} {UniRef: UniRef50_K1RAY9, Plasminogen activator inhibitor 1 RNA-binding protein n=2 Tax=Crassostrea gigas TaxID=29159 RepID=K1RAY9_CRAGI, [Score=86.7, Expect=6e-16]} {RNA1509_7006} |
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MligTCv3c-12991.3 | Mlig001299.g12 | 8.32 | Irradiation Int S/G2/M S/G2/M, no gonads Neoblast Neoblast, stringent |
Gut; X1 | PPID | Mlig001299.g12 {Length: 1065} {TRANSSPLICED} {Pfam: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD [PF00160.19, score=216.6]} {Human: ENSG00000171497, PPID, peptidylprolyl isomerase D, [Score=176, Expect=5e-53]; ENSG00000108179, PPIF, peptidylprolyl isomerase F, [Score=173, Expect=5e-54]; ENSG00000196262, PPIA, peptidylprolyl isomerase A (cyclophilin A), [Score=169, Expect=4e-53]} {Dmel: FBgn0004432, Cyp1, Cyclophilin 1, [Score=167, Expect=6e-52]; FBgn0036415, CG7768, , [Score=165, Expect=1e-51]; FBgn0039581, Moca-cyp, Moca-cyp, [Score=161, Expect=2e-45]} {Celegans: WBGene00000883, cyn-7, Caenorhabditis elegans Protein CYN-7 (cyn-7) mRNA, complete cds., [Score=192, Expect=1e-62]} {Smed: dd_Smed_v6_1508_0_1, [Score=179, Expect=2e-57]; dd_Smed_v6_457_0_1, [Score=173, Expect=5e-55]; dd_Smed_v6_133_0_1, [Score=171, Expect=4e-54]} {Smes: dd_Smes_v1_21527_1_1, [Score=177, Expect=2e-56]; dd_Smes_v1_11388_1_1, [Score=173, Expect=6e-55]; dd_Smes_v1_26527_1_1, [Score=171, Expect=4e-54]} {Smans: Smp_040130.1, [Score=175, Expect=2e-56]} {UniRef: UniRef50_A0A1I8F584, Peptidyl-prolyl cis-trans isomerase n=1 Tax=Macrostomum lignano TaxID=282301 RepID=A0A1I8F584_9PLAT, [Score=241, Expect=1e-79]} {RNA1509_23446} {WURTZEL: Gut [dd_Smed_v6_457_0_1, peptidylprolyl isomerase A (cyclophilin A) (PPIA)]} |
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MligTCv3c-16250.1 | Mlig020807.g3 | 8.32 | Irradiation |
Mlig020807.g3 {Length: 2342} {SignalP} {Pfam: Immunoglobulin domain [PF13927.4, score=49.8]; Immunoglobulin I-set domain [PF07679.14, score=45.9]; Immunoglobulin domain [PF13895.4, score=35.4]; Immunoglobulin V-set domain [PF07686.15, score=28.5]; Immunoglobulin domain [PF00047.23, score=26.8]} {UniRef: UniRef50_UPI000900D72F, UPI000900D72F related cluster n=1 Tax=unknown TaxID= RepID=UPI000900D72F, [Score=57.4, Expect=8e-06]; UniRef50_UPI00054BF282, PREDICTED: hemicentin-2 n=2 Tax=Larimichthys crocea TaxID=215358 RepID=UPI00054BF282, [Score=57.4, Expect=7e-06]} {RNA1509_1239, RNA1509_15245, RNA1509_3377, RNA1509_3600, RNA1509_390, RNA1509_42} | ||
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MligTCv3c-12673.2 | Mlig021770.g2 | 8.2 | Irradiation |
Mlig021770.g2 {Length: 713} {SignalP} {Pfam: PAN domain [PF14295.4, score=25.3]} {UniRef: UniRef50_UPI0002B47738, PREDICTED: uncharacterized protein LOC101238014 n=1 Tax=Hydra vulgaris TaxID=6087 RepID=UPI0002B47738, [Score=116, Expect=1e-30]} {RNA1509_11555, RNA1509_1513, RNA1509_272, RNA1509_4342, RNA1509_5952} | ||
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MligTCv3c-5880.1 | Mlig032789.g1 | 8.18 | Irradiation Int S/G2/M Germline S/G2/M, no gonads |
X1; X2 | DDX6 | Mlig032789.g1 {Length: 3245} {TRANSSPLICED} {Pfam: DEAD/DEAH box helicase [PF00270.27, score=147.5]; Helicase conserved C-terminal domain [PF00271.29, score=98.5]} {Human: ENSG00000110367, DDX6, DEAD (Asp-Glu-Ala-Asp) box polypeptide 6, [RH, Score=639, Expect=0.0]} {Dmel: FBgn0004419, me31B, maternal expression at 31B, [RH, Score=639, Expect=0.0]} {Celegans: WBGene00000479, cgh-1, Caenorhabditis elegans Protein CGH-1 (cgh-1) mRNA, complete cds., [RH, Score=625, Expect=0.0]} {Smed: dd_Smed_v6_1034_0_1, [RH, Score=682, Expect=0.0]; dd_Smed_v6_11802_0_1, [RH, Score=664, Expect=0.0]} {Smes: dd_Smes_v1_18084_1_1, [RH, Score=682, Expect=0.0]; dd_Smes_v1_15090_1_1, [RH, Score=664, Expect=0.0]} {Smans: Smp_211330.1, [RH, Score=635, Expect=0.0]} {UniRef: UniRef50_V5I8P5, Putative ATP-dependent RNA helicase me31b n=30 Tax=Bilateria TaxID=33213 RepID=V5I8P5_ANOGL, [Score=651, Expect=0.0]} {RNA1509_2093, RNA1509_3653, RNA1509_4861} |
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MligTCv3c-8538.7 | Mlig024642.g4 | 8.14 | Irradiation |
Mlig024642.g4 {Length: 475} {TRANSSPLICED} {RNA1509_651} | ||
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MligTCv3c-17386.7 | Mlig001693.g5 | 8.08 | Irradiation Int S/G2/M |
X1 | PRDX1 | Mlig001693.g5 {Length: 1200} {TRANSSPLICED} {Pfam: AhpC/TSA family [PF00578.19, score=128.0]; Redoxin [PF08534.8, score=61.6]; C-terminal domain of 1-Cys peroxiredoxin [PF10417.7, score=54.2]} {Human: ENSG00000117450, PRDX1, peroxiredoxin 1, [RH, Score=300, Expect=1e-103]} {Dmel: FBgn0040309, Jafrac1, thioredoxin peroxidase 1, [RH, Score=280, Expect=9e-96]} {Celegans: WBGene00006434, prdx-2, Caenorhabditis elegans Protein PRDX-2, isoform a (prdx-2) mRNA, complete cds., [RH, Score=271, Expect=2e-92]} {Smed: dd_Smed_v6_7781_0_2, [RH, Score=281, Expect=2e-96]; dd_Smed_v6_3517_0_1, [RH, Score=275, Expect=8e-94]} {Smes: dd_Smes_v1_36700_1_3, [RH, Score=281, Expect=8e-96]; dd_Smes_v1_88374_1_1, [RH, Score=275, Expect=1e-93]} {Smans: Smp_062900.1, [RH, Score=274, Expect=5e-94]} {UniRef: UniRef50_A0A0P5NJ89, Putative Boundary element associated factor n=5 Tax=Daphnia magna TaxID=35525 RepID=A0A0P5NJ89_9CRUS, [Score=308, Expect=2e-98]; UniRef50_A0A0P5R9U2, Boundary element associated factor (Fragment) n=1 Tax=Daphnia magna TaxID=35525 RepID=A0A0P5R9U2_9CRUS, [Score=306, Expect=1e-100]; UniRef50_A0A0P5ECE7, Boundary element associated factor n=2 Tax=Daphnia magna TaxID=35525 RepID=A0A0P5ECE7_9CRUS, [Score=306, Expect=3e-96]} {RNA1509_3090} |
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MligTCv3c-14716.1 | Mlig003532.g1 | 8.07 | Irradiation Int S/G2/M Germline |
Mlig003532.g1 {Length: 3472} {RNA1509_32167} | ||
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MligTCv3c-19111.2 | Mlig030744.g1 | 8.03 | Irradiation |
Mlig030744.g1 {Length: 2895} {SignalP} {Pfam: Kazal-type serine protease inhibitor domain [PF00050.19, score=20.2]; Kazal-type serine protease inhibitor domain [PF07648.13, score=19.5]} {RNA1509_41887, RNA1509_493} | ||
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MligTCv3c-7100.1 | Mlig001367.g3 | 8 | Irradiation Int S/G2/M S/G2/M, no gonads Neoblast Neoblast, stringent |
Sexual_biased | NAP1L1 | Mlig001367.g3 {Length: 1984} {TRANSSPLICED} {Pfam: Nucleosome assembly protein (NAP) [PF00956.16, score=315.7]} {Human: ENSG00000187109, NAP1L1, nucleosome assembly protein 1-like 1, [Score=214, Expect=9e-66]; ENSG00000205531, NAP1L4, nucleosome assembly protein 1-like 4, [Score=213, Expect=5e-65]} {Dmel: FBgn0015268, Nap1, Nucleosome assembly protein 1, [Score=192, Expect=2e-57]} {Celegans: WBGene00017075, nap-1, Caenorhabditis elegans Protein NAP-1 (nap-1) mRNA, complete cds., [Score=158, Expect=3e-45]} {Smed: dd_Smed_v6_997_0_1, [Score=214, Expect=2e-66]} {Smes: dd_Smes_v1_21894_1_1, [Score=214, Expect=5e-66]} {Smans: Smp_023530.1, [Score=214, Expect=3e-66]} {UniRef: UniRef50_C1LHF9, NAP-1-related protein n=7 Tax=Digenea TaxID=256429 RepID=C1LHF9_SCHJA, [Score=230, Expect=8e-70]; UniRef50_A4QP71, Nap1l4a protein n=27 Tax=Bilateria TaxID=33213 RepID=A4QP71_DANRE, [Score=228, Expect=1e-69]} {RNA1509_320} |
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MligTCv3c-17688.2 | Mlig022465.g2 | 7.97 | Irradiation Int S/G2/M Germline |
Mlig022465.g2 {Length: 1207} {SignalP} | ||
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MligTCv3c-18344.0 | Mlig006934.g1 | 7.87 | Irradiation Int S/G2/M Germline |
Xins | Mlig006934.g1 {Length: 3674} {Pfam: SPATIAL [PF15256.4, score=102.3]} {Smed: dd_Smed_v6_8051_0_1, [Score=62.4, Expect=3e-11]} {Smes: dd_Smes_v1_35041_1_1, [RH, Score=64.7, Expect=1e-12]} {Smans: Smp_194750.1, [Score=71.6, Expect=1e-14]} {UniRef: UniRef50_K1R2A0, Protein SPATIAL n=7 Tax=Mollusca TaxID=6447 RepID=K1R2A0_CRAGI, [Score=94.7, Expect=8e-20]; UniRef50_UPI000698FA0C, PREDICTED: uncharacterized protein LOC106160400 n=1 Tax=Lingula unguis TaxID=7574 RepID=UPI000698FA0C, [Score=94.4, Expect=1e-19]} {RNA1509_12769, RNA1509_15678, RNA1509_2033, RNA1509_25356, RNA1509_398, RNA1509_40013, RNA1509_4275, RNA1509_43669, RNA1509_45918, RNA1509_48879, RNA1509_51475, RNA1509_9566} | |
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MligTCv3c-20480.3 | Mlig031596.g1 | 7.75 | Irradiation Int S/G2/M S/G2/M, no gonads Neoblast Neoblast, stringent |
SYNCRIP | Mlig031596.g1 {Length: 3351} {TRANSSPLICED} {Pfam: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) [PF00076.20, score=74.8]} {Human: ENSG00000135316, SYNCRIP, synaptotagmin binding, cytoplasmic RNA interacting protein, [Score=55.8, Expect=2e-07]} {Smed: dd_Smed_v6_8569_0_1, [RH, Score=66.6, Expect=3e-11]} {Smes: dd_Smes_v1_90401_1_1, [RH, Score=66.6, Expect=4e-11]} {Smans: Smp_015690.1, [Score=81.6, Expect=5e-16]} {UniRef: UniRef50_A0A087VXT4, Nucleolin n=4 Tax=Taeniidae TaxID=6208 RepID=A0A087VXT4_ECHMU, [Score=77.8, Expect=5e-13]} {RNA1509_28909, RNA1509_34196, RNA1509_38976, RNA1509_4753} | |
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MligTCv3c-14716.2 | Mlig019340.g1 | 7.74 | Irradiation Int S/G2/M Germline |
Mlig019340.g1 {Length: 792} {SignalP} {RNA1509_16634, RNA1509_24230, RNA1509_36542, RNA1509_3936, RNA1509_59} |