M. lignano Neoblast Screen 2016.
Mlig_RNA_3_7_v3 transcriptome version. Transcriptional signatures of somatic neoblasts and germline cells in Macrostomum lignano. (2016) Grudniewska M*, Mouton S*, Simanov S, Beltman F, Grelling M, de Mulder K, Arindrarto W, Weissert P, van der Elst S, Berezikov E. eLife 2016;5:e20607. Home Download

Text search

search Exact search

Found 534 results for log2(CutG2M/CutG1) between 0 and -1 and fdr <= 0.05. Showing entries 1-20.

Graph Cluster Transcripts Mean logCPM Classification Smed/Human type Human gene Annotation
1. MligTCv3c-4698.9 Mlig017551.g1 10.73 Mlig017551.g1 {Length: 800} {SignalP} {RNA1509_33982}
2. MligTCv3c-9520.2 Mlig021402.g2 10.2 X1 FABP3 Mlig021402.g2 {Length: 1532} {Pfam: Lipocalin / cytosolic fatty-acid binding protein family [PF00061.21, score=83.0]; Lipocalin / cytosolic fatty-acid binding protein family [PF14651.4, score=41.6]} {Human: ENSG00000121769, FABP3, fatty acid binding protein 3, muscle and heart (mammary-derived growth inhibitor), [RH, Score=130, Expect=1e-39]; ENSG00000147588, PMP2, peripheral myelin protein 2, [RH, Score=129, Expect=5e-39]; ENSG00000164434, FABP7, fatty acid binding protein 7, brain, [RH, Score=127, Expect=2e-38]} {Dmel: FBgn0037913, fabp, fatty acid bindin protein, [RH, Score=110, Expect=9e-32]} {Celegans: WBGene00002257, lbp-5, Caenorhabditis elegans Protein LBP-5 (lbp-5) mRNA, complete cds., [RH, Score=121, Expect=2e-36]} {Smed: dd_Smed_v6_599_0_1, [RH, Score=121, Expect=3e-36]} {Smes: dd_Smes_v1_78079_1_1, [RH, Score=122, Expect=3e-36]} {Smans: Smp_095360.1, [Score=90.9, Expect=1e-24]} {UniRef: UniRef50_E2BJH6, Myelin P2 protein n=7 Tax=Neoptera TaxID=33340 RepID=E2BJH6_HARSA, [Score=135, Expect=4e-39]}
3. MligTCv3c-5948.1 Mlig027742.g2 10.15 Mlig027742.g2 {Length: 981}
4. MligTCv3c-15493.19 Mlig013123.g1 9.8 Testis TUBA3C Mlig013123.g1 {Length: 1986} {Pfam: Tubulin/FtsZ family, GTPase domain [PF00091.23, score=229.3]; Tubulin C-terminal domain [PF03953.15, score=170.6]; Tubulin domain [PF14881.4, score=18.9]} {Human: ENSG00000198033, TUBA3C, tubulin, alpha 3c, [RH, Score=872, Expect=0.0]; ENSG00000075886, TUBA3D, tubulin, alpha 3d, [RH, Score=872, Expect=0.0]; ENSG00000167552, TUBA1A, tubulin, alpha 1a, [RH, Score=869, Expect=0.0]; ENSG00000123416, TUBA1B, tubulin, alpha 1b, [RH, Score=866, Expect=0.0]; ENSG00000167553, TUBA1C, tubulin, alpha 1c, [RH, Score=866, Expect=0.0]; ENSG00000152086, TUBA3E, tubulin, alpha 3e, [RH, Score=858, Expect=0.0]; ENSG00000127824, TUBA4A, tubulin, alpha 4a, [RH, Score=849, Expect=0.0]} {Dmel: FBgn0003884, alphaTub84B, alpha-Tubulin at 84B, [RH, Score=871, Expect=0.0]; FBgn0003885, alphaTub84D, alpha-Tubulin at 84D, [RH, Score=870, Expect=0.0]; FBgn0003886, alphaTub85E, alpha-Tubulin at 85E, [RH, Score=857, Expect=0.0]} {Celegans: WBGene00003175, mec-12, Caenorhabditis elegans Protein MEC-12 (mec-12) mRNA, complete cds., [RH, Score=830, Expect=0.0]} {Smed: dd_Smed_v6_38_0_1, [RH, Score=872, Expect=0.0]; dd_Smed_v6_10947_0_2, [RH, Score=870, Expect=0.0]} {Smes: dd_Smes_v1_40349_1_2, [RH, Score=872, Expect=0.0]; dd_Smes_v1_88063_1_1, [RH, Score=870, Expect=0.0]} {Smans: Smp_103790.1, [RH, Score=873, Expect=0.0]; Smp_090120.1, [RH, Score=872, Expect=0.0]; Smp_016780.1, [RH, Score=854, Expect=0.0]; Smp_090120.2, [RH, Score=841, Expect=0.0]} {UniRef: UniRef50_A0A0N0BGY9, Tubulin alpha-1 chain n=2 Tax=Bilateria TaxID=33213 RepID=A0A0N0BGY9_9HYME, [Score=875, Expect=0.0]; UniRef50_Q71U36, Tubulin alpha-1A chain n=3140 Tax=Eukaryota TaxID=2759 RepID=TBA1A_HUMAN, [Score=869, Expect=0.0]} {RNA1509_12471, RNA1509_1730, RNA1509_3160, RNA1509_3273, RNA1509_36805, RNA1509_38752, RNA1509_41246, RNA1509_55904, RNA1509_9718}
5. MligTCv3c-10685.0 Mlig028972.g1 9.25 Epidermal lineage (early + late + mature); Zeta neoblasts; Sexual_biased; X2 Mlig028972.g1 {Length: 1029} {Pfam: Dynein light chain type 1 [PF01221.16, score=54.8]; EF-hand domain [PF14658.4, score=19.7]} {Celegans: WBGene00043067, dlc-5, Caenorhabditis elegans Protein DLC-5 (dlc-5) mRNA, complete cds., [Score=48.5, Expect=3e-07]} {Smed: dd_Smed_v6_1881_0_1, [Score=89.7, Expect=8e-23]; dd_Smed_v6_6707_0_3, [Score=87.8, Expect=4e-22]; dd_Smed_v6_446_0_1, [Score=85.5, Expect=4e-21]} {Smes: dd_Smes_v1_67495_1_1, [Score=92.4, Expect=9e-24]} {Smans: Smp_169200.1, [Score=90.9, Expect=2e-23]; Smp_195090.1, [Score=89.7, Expect=3e-23]} {UniRef: UniRef50_I4EC26, Tegumental antigen n=4 Tax=Schistosoma TaxID=6181 RepID=I4EC26_SCHMA, [Score=105, Expect=4e-26]} {RNA1509_30835, RNA1509_31947, RNA1509_44672} {WURTZEL: Epidermal lineage (early + late + mature) [dd_Smed_v6_1881_0_1, NA]} {WURTZEL: Zeta neoblasts [dd_Smed_v6_446_0_1, NA]}
6. MligTCv3c-18914.2 Mlig021901.g1 9.24 X2 DYNLL1 Mlig021901.g1 {Length: 718} {Pfam: Dynein light chain type 1 [PF01221.16, score=81.4]} {Human: ENSG00000088986, DYNLL1, dynein, light chain, LC8-type 1, [Score=79.0, Expect=4e-20]; ENSG00000121083, DYNLL2, dynein, light chain, LC8-type 2, [Score=75.9, Expect=5e-19]} {Dmel: FBgn0011760, ctp, cut up, [Score=77.4, Expect=7e-20]; FBgn0026141, Cdlc2, Cytoplasmic dynein light chain 2, [Score=77.4, Expect=9e-20]} {Celegans: WBGene00001005, dlc-1, Caenorhabditis elegans Protein DLC-1 (dlc-1) mRNA, complete cds., [Score=76.3, Expect=2e-19]} {Smed: dd_Smed_v6_10084_0_5, [Score=77.4, Expect=5e-20]; dd_Smed_v6_11037_0_1, [Score=76.6, Expect=2e-19]; dd_Smed_v6_613_0_1, [Score=73.6, Expect=2e-18]} {Smes: dd_Smes_v1_40788_1_3, [Score=77.4, Expect=7e-20]; dd_Smes_v1_21202_1_1, [Score=76.6, Expect=2e-19]; dd_Smes_v1_4812_1_1, [Score=74.7, Expect=7e-19]} {Smans: Smp_040680.1, [Score=73.2, Expect=1e-18]; Smp_200180.1, [Score=72.8, Expect=1e-18]; Smp_095520.1, [Score=70.5, Expect=1e-17]} {UniRef: UniRef50_P63167, Dynein light chain 1, cytoplasmic n=92 Tax=Amniota TaxID=32524 RepID=DYL1_HUMAN, [Score=79.0, Expect=3e-18]} {RNA1509_2029, RNA1509_663}
7. MligTCv3c-562.1551 Mlig011416.g2, Mlig011416.g1, Mlig011416.g4, Mlig011416.g3 9.24 Gamma neoblasts; Xins ACTG1

Mlig011416.g2 {Length: 1522} {Pfam: Actin [PF00022.17, score=499.6]} {Human: ENSG00000184009, ACTG1, actin, gamma 1, [RH, Score=768, Expect=0.0]; ENSG00000075624, ACTB, actin, beta, [RH, Score=763, Expect=0.0]; ENSG00000163017, ACTG2, actin, gamma 2, smooth muscle, enteric, [RH, Score=746, Expect=0.0]; ENSG00000107796, ACTA2, actin, alpha 2, smooth muscle, aorta, [RH, Score=745, Expect=0.0]; ENSG00000159251, ACTC1, actin, alpha, cardiac muscle 1, [RH, Score=743, Expect=0.0]; ENSG00000143632, ACTA1, actin, alpha 1, skeletal muscle, [RH, Score=743, Expect=0.0]} {Dmel: FBgn0000042, Act5C, Actin 5C, [RH, Score=770, Expect=0.0]; FBgn0000043, Act42A, Actin 42A, [RH, Score=769, Expect=0.0]; FBgn0000046, Act87E, Actin 87E, [RH, Score=763, Expect=0.0]; FBgn0000044, Act57B, Actin 57B, [RH, Score=761, Expect=0.0]; FBgn0000047, Act88F, Actin 88F, [RH, Score=758, Expect=0.0]; FBgn0000045, Act79B, Actin 79B, [RH, Score=753, Expect=0.0]} {Celegans: WBGene00000066, act-4, Caenorhabditis elegans Protein ACT-4, isoform a., [RH, Score=767, Expect=0.0]} {Smed: dd_Smed_v6_3_0_1, [RH, Score=759, Expect=0.0]} {Smes: dd_Smes_v1_31847_1_1, [RH, Score=760, Expect=0.0]} {Smans: Smp_046600.1, [RH, Score=768, Expect=0.0]; Smp_183710.1, [RH, Score=762, Expect=0.0]; Smp_161920.1, [RH, Score=732, Expect=0.0]; Smp_202970.1, [RH, Score=730, Expect=0.0]} {UniRef: UniRef50_P60709, Actin, cytoplasmic 1 n=1357 Tax=Eukaryota TaxID=2759 RepID=ACTB_HUMAN, [Score=763, Expect=0.0]} {RNA1509_3332, RNA1509_47395, RNA1509_8544}

Mlig011416.g1 {Length: 1529} {Pfam: Actin [PF00022.17, score=499.6]} {Human: ENSG00000184009, ACTG1, actin, gamma 1, [RH, Score=768, Expect=0.0]; ENSG00000075624, ACTB, actin, beta, [RH, Score=763, Expect=0.0]; ENSG00000163017, ACTG2, actin, gamma 2, smooth muscle, enteric, [RH, Score=746, Expect=0.0]; ENSG00000107796, ACTA2, actin, alpha 2, smooth muscle, aorta, [RH, Score=745, Expect=0.0]; ENSG00000159251, ACTC1, actin, alpha, cardiac muscle 1, [RH, Score=743, Expect=0.0]; ENSG00000143632, ACTA1, actin, alpha 1, skeletal muscle, [RH, Score=743, Expect=0.0]} {Dmel: FBgn0000042, Act5C, Actin 5C, [RH, Score=770, Expect=0.0]; FBgn0000043, Act42A, Actin 42A, [RH, Score=769, Expect=0.0]; FBgn0000046, Act87E, Actin 87E, [RH, Score=763, Expect=0.0]; FBgn0000044, Act57B, Actin 57B, [RH, Score=761, Expect=0.0]; FBgn0000047, Act88F, Actin 88F, [RH, Score=758, Expect=0.0]; FBgn0000045, Act79B, Actin 79B, [RH, Score=753, Expect=0.0]} {Celegans: WBGene00000066, act-4, Caenorhabditis elegans Protein ACT-4, isoform a., [RH, Score=767, Expect=0.0]} {Smed: dd_Smed_v6_3_0_1, [RH, Score=759, Expect=0.0]} {Smes: dd_Smes_v1_31847_1_1, [RH, Score=760, Expect=0.0]} {Smans: Smp_046600.1, [RH, Score=768, Expect=0.0]; Smp_183710.1, [RH, Score=762, Expect=0.0]; Smp_161920.1, [RH, Score=732, Expect=0.0]; Smp_202970.1, [RH, Score=730, Expect=0.0]} {UniRef: UniRef50_P60709, Actin, cytoplasmic 1 n=1357 Tax=Eukaryota TaxID=2759 RepID=ACTB_HUMAN, [Score=763, Expect=0.0]} {RNA1509_6657, RNA1509_8544, RNA1509_9893} {WURTZEL: Gamma neoblasts [dd_Smed_v6_3_0_1, actin, beta (ACTB)]}

Mlig011416.g4 {Length: 1517} {Pfam: Actin [PF00022.17, score=499.6]} {Human: ENSG00000184009, ACTG1, actin, gamma 1, [RH, Score=768, Expect=0.0]; ENSG00000075624, ACTB, actin, beta, [RH, Score=763, Expect=0.0]; ENSG00000163017, ACTG2, actin, gamma 2, smooth muscle, enteric, [RH, Score=746, Expect=0.0]; ENSG00000107796, ACTA2, actin, alpha 2, smooth muscle, aorta, [RH, Score=745, Expect=0.0]; ENSG00000159251, ACTC1, actin, alpha, cardiac muscle 1, [RH, Score=743, Expect=0.0]; ENSG00000143632, ACTA1, actin, alpha 1, skeletal muscle, [RH, Score=743, Expect=0.0]} {Dmel: FBgn0000042, Act5C, Actin 5C, [RH, Score=770, Expect=0.0]; FBgn0000043, Act42A, Actin 42A, [RH, Score=769, Expect=0.0]; FBgn0000046, Act87E, Actin 87E, [RH, Score=763, Expect=0.0]; FBgn0000044, Act57B, Actin 57B, [RH, Score=761, Expect=0.0]; FBgn0000047, Act88F, Actin 88F, [RH, Score=758, Expect=0.0]; FBgn0000045, Act79B, Actin 79B, [RH, Score=753, Expect=0.0]} {Celegans: WBGene00000066, act-4, Caenorhabditis elegans Protein ACT-4, isoform a., [RH, Score=767, Expect=0.0]} {Smed: dd_Smed_v6_3_0_1, [RH, Score=759, Expect=0.0]} {Smes: dd_Smes_v1_31847_1_1, [RH, Score=760, Expect=0.0]} {Smans: Smp_046600.1, [RH, Score=768, Expect=0.0]; Smp_183710.1, [RH, Score=762, Expect=0.0]; Smp_161920.1, [RH, Score=732, Expect=0.0]; Smp_202970.1, [RH, Score=730, Expect=0.0]} {UniRef: UniRef50_P60709, Actin, cytoplasmic 1 n=1357 Tax=Eukaryota TaxID=2759 RepID=ACTB_HUMAN, [Score=763, Expect=0.0]} {RNA1509_39239, RNA1509_8544}

Mlig011416.g3 {Length: 1529} {Pfam: Actin [PF00022.17, score=499.6]} {Human: ENSG00000184009, ACTG1, actin, gamma 1, [RH, Score=768, Expect=0.0]; ENSG00000075624, ACTB, actin, beta, [RH, Score=763, Expect=0.0]; ENSG00000163017, ACTG2, actin, gamma 2, smooth muscle, enteric, [RH, Score=746, Expect=0.0]; ENSG00000107796, ACTA2, actin, alpha 2, smooth muscle, aorta, [RH, Score=745, Expect=0.0]; ENSG00000159251, ACTC1, actin, alpha, cardiac muscle 1, [RH, Score=743, Expect=0.0]; ENSG00000143632, ACTA1, actin, alpha 1, skeletal muscle, [RH, Score=743, Expect=0.0]} {Dmel: FBgn0000042, Act5C, Actin 5C, [RH, Score=770, Expect=0.0]; FBgn0000043, Act42A, Actin 42A, [RH, Score=769, Expect=0.0]; FBgn0000046, Act87E, Actin 87E, [RH, Score=763, Expect=0.0]; FBgn0000044, Act57B, Actin 57B, [RH, Score=761, Expect=0.0]; FBgn0000047, Act88F, Actin 88F, [RH, Score=758, Expect=0.0]; FBgn0000045, Act79B, Actin 79B, [RH, Score=753, Expect=0.0]} {Celegans: WBGene00000066, act-4, Caenorhabditis elegans Protein ACT-4, isoform a., [RH, Score=767, Expect=0.0]} {Smed: dd_Smed_v6_3_0_1, [RH, Score=759, Expect=0.0]} {Smes: dd_Smes_v1_31847_1_1, [RH, Score=760, Expect=0.0]} {Smans: Smp_046600.1, [RH, Score=768, Expect=0.0]; Smp_183710.1, [RH, Score=762, Expect=0.0]; Smp_161920.1, [RH, Score=732, Expect=0.0]; Smp_202970.1, [RH, Score=730, Expect=0.0]} {UniRef: UniRef50_P60709, Actin, cytoplasmic 1 n=1357 Tax=Eukaryota TaxID=2759 RepID=ACTB_HUMAN, [Score=763, Expect=0.0]} {RNA1509_30862, RNA1509_41248, RNA1509_8544}
8. MligTCv3c-4998.1 Mlig015594.g2, Mlig000187.g2 9.23 X2 COL6A6; VWA2

Mlig015594.g2 {Length: 18797} {Pfam: von Willebrand factor type A domain [PF00092.26, score=109.8]; von Willebrand factor type A domain [PF13519.4, score=53.2]; Transcription factor TFIID (or TATA-binding protein, TBP) [PF00352.19, score=38.0]; Protein of unknown function (DUF3203) [PF11462.6, score=22.8]; Vacuolar sorting protein 39 domain 1 [PF10366.7, score=22.2]} {Human: ENSG00000206384, COL6A6, collagen, type VI, alpha 6, [Score=90.1, Expect=1e-16]} {Celegans: WBGene00003497, mup-4, Caenorhabditis elegans Protein MUP-4 (mup-4) mRNA, complete cds., [Score=83.6, Expect=4e-15]} {Smed: dd_Smed_v6_1071_0_1, [RH, Score=120, Expect=5e-27]} {Smes: dd_Smes_v1_40895_1_1, [Score=121, Expect=2e-27]} {UniRef: UniRef50_UPI000697BA2F, PREDICTED: uncharacterized protein LOC106168379 n=1 Tax=Lingula unguis TaxID=7574 RepID=UPI000697BA2F, [Score=113, Expect=1e-21]} {RNA1509_14864, RNA1509_167, RNA1509_20136, RNA1509_204, RNA1509_21996, RNA1509_25051, RNA1509_27667, RNA1509_28098, RNA1509_31948, RNA1509_32716, RNA1509_35430, RNA1509_3544, RNA1509_39504, RNA1509_43964, RNA1509_45354}

Mlig000187.g2 {Length: 9745} {SignalP} {Pfam: von Willebrand factor type A domain [PF00092.26, score=327.0]; von Willebrand factor type A domain [PF13519.4, score=159.4]} {Human: ENSG00000165816, VWA2, von Willebrand factor A domain containing 2, [RH, Score=83.6, Expect=2e-15]} {Celegans: WBGene00003497, mup-4, Caenorhabditis elegans Protein MUP-4 (mup-4) mRNA, complete cds., [Score=80.5, Expect=1e-14]} {Smed: dd_Smed_v6_1071_0_1, [RH, Score=116, Expect=5e-26]} {Smes: dd_Smes_v1_40895_1_1, [RH, Score=119, Expect=2e-27]} {UniRef: UniRef50_UPI000698D0C7, PREDICTED: uncharacterized protein LOC106179416, partial n=1 Tax=Lingula unguis TaxID=7574 RepID=UPI000698D0C7, [Score=106, Expect=4e-20]; UniRef50_UPI000697BA2F, PREDICTED: uncharacterized protein LOC106168379 n=1 Tax=Lingula unguis TaxID=7574 RepID=UPI000697BA2F, [Score=106, Expect=4e-20]} {RNA1509_13006, RNA1509_1372, RNA1509_16525, RNA1509_1899, RNA1509_28144, RNA1509_39641, RNA1509_4016, RNA1509_40212, RNA1509_57547}
9. MligTCv3c-10685.2 Mlig028972.g3 9.21 X2 Mlig028972.g3 {Length: 1281} {Pfam: Dynein light chain type 1 [PF01221.16, score=55.9]; EF-hand domain [PF14658.4, score=21.6]; EF hand [PF00036.30, score=19.9]} {Celegans: WBGene00043067, dlc-5, Caenorhabditis elegans Protein DLC-5 (dlc-5) mRNA, complete cds., [Score=47.0, Expect=1e-06]} {Smed: dd_Smed_v6_6707_0_3, [Score=92.4, Expect=7e-24]; dd_Smed_v6_1881_0_1, [Score=91.7, Expect=1e-23]} {Smes: dd_Smes_v1_67495_1_1, [Score=94.4, Expect=2e-24]} {Smans: Smp_169200.1, [Score=90.9, Expect=2e-23]; Smp_195090.1, [Score=90.5, Expect=2e-23]} {UniRef: UniRef50_I4EC26, Tegumental antigen n=4 Tax=Schistosoma TaxID=6181 RepID=I4EC26_SCHMA, [Score=107, Expect=1e-26]} {RNA1509_11798, RNA1509_1432, RNA1509_190, RNA1509_22166, RNA1509_27322, RNA1509_30457, RNA1509_31756, RNA1509_34682, RNA1509_3720, RNA1509_44672, RNA1509_7613}
10. MligTCv3c-5948.0 Mlig003999.g1 9.06 Mlig003999.g1 {Length: 845} {TRANSSPLICED} {RNA1509_18953, RNA1509_461, RNA1509_573}
11. MligTCv3c-11864.1 Mlig014142.g2 9.05 Xins DYNLL2 Mlig014142.g2 {Length: 592} {Pfam: Dynein light chain type 1 [PF01221.16, score=72.8]} {Human: ENSG00000121083, DYNLL2, dynein, light chain, LC8-type 2, [Score=50.4, Expect=5e-09]; ENSG00000088986, DYNLL1, dynein, light chain, LC8-type 1, [Score=49.7, Expect=1e-08]; ENSG00000205579, DYNLL1P1, dynein, light chain, LC8-type 1 pseudogene 1, [Score=48.5, Expect=3e-08]; ENSG00000100246, DNAL4, dynein, axonemal, light chain 4, [Score=48.1, Expect=6e-08]} {Dmel: FBgn0011760, ctp, cut up, [Score=48.9, Expect=1e-08]; FBgn0026141, Cdlc2, Cytoplasmic dynein light chain 2, [Score=48.5, Expect=2e-08]; FBgn0033687, CG8407, , [Score=47.0, Expect=1e-07]} {Celegans: WBGene00010888, dlc-2, Caenorhabditis elegans Protein DLC-2 (dlc-2) mRNA, complete cds., [Score=55.5, Expect=2e-11]} {Smed: dd_Smed_v6_2487_0_1, [Score=56.6, Expect=1e-11]; dd_Smed_v6_11037_0_1, [Score=55.8, Expect=3e-11]} {Smes: dd_Smes_v1_21202_1_1, [Score=56.6, Expect=1e-11]; dd_Smes_v1_12107_1_1, [Score=56.6, Expect=1e-11]} {Smans: Smp_040680.1, [Score=52.8, Expect=1e-10]; Smp_095520.1, [Score=52.0, Expect=2e-10]; Smp_200180.1, [Score=51.6, Expect=3e-10]} {UniRef: UniRef50_A0A0V0JBQ8, Dynein light chain 1 n=3 Tax=Eucestoda TaxID=6200 RepID=A0A0V0JBQ8_SCHSO, [Score=60.1, Expect=1e-10]} {RNA1509_27252, RNA1509_360, RNA1509_38199, RNA1509_38906}
12. MligTCv3c-9520.1 Mlig017872.g1 9.02 X1 FABP3 Mlig017872.g1 {Length: 1107} {Pfam: Lipocalin / cytosolic fatty-acid binding protein family [PF00061.21, score=83.0]; Lipocalin / cytosolic fatty-acid binding protein family [PF14651.4, score=41.6]} {Human: ENSG00000121769, FABP3, fatty acid binding protein 3, muscle and heart (mammary-derived growth inhibitor), [RH, Score=130, Expect=1e-39]; ENSG00000147588, PMP2, peripheral myelin protein 2, [RH, Score=129, Expect=5e-39]; ENSG00000164434, FABP7, fatty acid binding protein 7, brain, [RH, Score=127, Expect=2e-38]} {Dmel: FBgn0037913, fabp, fatty acid bindin protein, [RH, Score=110, Expect=9e-32]} {Celegans: WBGene00002257, lbp-5, Caenorhabditis elegans Protein LBP-5 (lbp-5) mRNA, complete cds., [RH, Score=121, Expect=2e-36]} {Smed: dd_Smed_v6_599_0_1, [RH, Score=121, Expect=3e-36]} {Smes: dd_Smes_v1_78079_1_1, [RH, Score=122, Expect=3e-36]} {Smans: Smp_095360.1, [Score=90.9, Expect=1e-24]} {UniRef: UniRef50_E2BJH6, Myelin P2 protein n=7 Tax=Neoptera TaxID=33340 RepID=E2BJH6_HARSA, [Score=135, Expect=4e-39]} {RNA1509_1515, RNA1509_16289, RNA1509_456}
13. MligTCv3c-18509.0 Mlig018527.g1, Mlig018527.g3, Mlig018527.g2 8.86 Xins NPC2

Mlig018527.g1 {Length: 1310} {Pfam: ML domain [PF02221.13, score=52.6]} {Human: ENSG00000119655, NPC2, Niemann-Pick disease, type C2, [Score=50.8, Expect=8e-08]} {Dmel: FBgn0031381, Npc2a, Niemann-Pick type C-2a, [Score=61.6, Expect=3e-12]} {Smed: dd_Smed_v6_602_0_1, [Score=49.7, Expect=6e-08]} {Smes: dd_Smes_v1_99451_1_1, [Score=49.7, Expect=7e-08]} {UniRef: UniRef50_UPI00077FAF6F, UPI00077FAF6F related cluster n=1 Tax=unknown TaxID= RepID=UPI00077FAF6F, [Score=82.8, Expect=5e-18]} {RNA1509_10684, RNA1509_9444}

Mlig018527.g3 {Length: 1129} {Pfam: ML domain [PF02221.13, score=52.6]} {Human: ENSG00000119655, NPC2, Niemann-Pick disease, type C2, [Score=50.8, Expect=8e-08]} {Dmel: FBgn0031381, Npc2a, Niemann-Pick type C-2a, [Score=61.6, Expect=3e-12]} {Smed: dd_Smed_v6_602_0_1, [Score=49.7, Expect=6e-08]} {Smes: dd_Smes_v1_99451_1_1, [Score=49.7, Expect=7e-08]} {UniRef: UniRef50_UPI00077FAF6F, UPI00077FAF6F related cluster n=1 Tax=unknown TaxID= RepID=UPI00077FAF6F, [Score=82.8, Expect=5e-18]} {RNA1509_17367, RNA1509_9444}

Mlig018527.g2 {Length: 1317} {Pfam: ML domain [PF02221.13, score=52.6]} {Human: ENSG00000119655, NPC2, Niemann-Pick disease, type C2, [Score=50.8, Expect=8e-08]} {Dmel: FBgn0031381, Npc2a, Niemann-Pick type C-2a, [Score=61.6, Expect=3e-12]} {Smed: dd_Smed_v6_602_0_1, [Score=49.7, Expect=6e-08]} {Smes: dd_Smes_v1_99451_1_1, [Score=49.7, Expect=7e-08]} {UniRef: UniRef50_UPI00077FAF6F, UPI00077FAF6F related cluster n=1 Tax=unknown TaxID= RepID=UPI00077FAF6F, [Score=82.8, Expect=5e-18]} {RNA1509_10535, RNA1509_52, RNA1509_5223, RNA1509_9444}
14. MligTCv3c-19006.2 Mlig011389.g1 8.78

 Int S/G2/M 

 Germline 

 X2 P4HB Mlig011389.g1 {Length: 3108} {SignalP} {Pfam: Thioredoxin [PF00085.18, score=219.5]; Thioredoxin-like domain [PF13848.4, score=157.7]; Thioredoxin-like domain [PF13098.4, score=58.4]; Calsequestrin [PF01216.15, score=53.7]; Thioredoxin-like [PF13905.4, score=48.3]; OST3 / OST6 family, transporter family [PF04756.11, score=46.6]; Thioredoxin-like [PF13899.4, score=44.4]; ERp29, N-terminal domain [PF07912.11, score=42.6]; AhpC/TSA family [PF00578.19, score=37.6]; Redoxin [PF08534.8, score=31.1]; F plasmid transfer operon protein [PF13728.4, score=20.2]} {Human: ENSG00000185624, P4HB, prolyl 4-hydroxylase, beta polypeptide, [RH, Score=572, Expect=0.0]} {Dmel: FBgn0014002, Pdi, Protein disulfide isomerase, [RH, Score=511, Expect=1e-179]} {Celegans: WBGene00003963, pdi-2, Caenorhabditis elegans Protein PDI-2, isoform a (pdi-2) mRNA, complete cds., [RH, Score=566, Expect=0.0]} {Smed: dd_Smed_v6_250_0_1, [RH, Score=579, Expect=0.0]} {Smes: dd_Smes_v1_77735_1_1, [RH, Score=579, Expect=0.0]} {Smans: Smp_056760.1, [RH, Score=503, Expect=1e-176]} {UniRef: UniRef50_A0A1I8FUH2, Protein disulfide-isomerase n=2 Tax=Macrostomum lignano TaxID=282301 RepID=A0A1I8FUH2_9PLAT, [Score=647, Expect=0.0]} {RNA1509_2339, RNA1509_70}
15. MligTCv3c-14979.1 Mlig011207.g5, Mlig011207.g4, Mlig011207.g1 8.71

 Irradiation 

 X1

Mlig011207.g5 {Length: 2244} {Pfam: Hsp20/alpha crystallin family [PF00011.19, score=96.3]} {Celegans: WBGene00008591, F08H9.3, Caenorhabditis elegans Protein F08H9.3 (F08H9.3) mRNA, complete cds., [RH, Score=50.8, Expect=6e-08]} {Smed: dd_Smed_v6_1039_0_1, [RH, Score=80.9, Expect=6e-18]} {Smes: dd_Smes_v1_40328_1_1, [RH, Score=81.3, Expect=7e-18]} {Smans: Smp_049300.3, [Score=45.4, Expect=8e-06]} {UniRef: UniRef50_UPI000779F293, UPI000779F293 related cluster n=1 Tax=unknown TaxID= RepID=UPI000779F293, [Score=73.2, Expect=4e-13]; UniRef50_H9LIX5, Small heat shock protein (Fragment) n=1 Tax=Crassostrea ariakensis TaxID=94323 RepID=H9LIX5_CRAAR, [Score=72.8, Expect=4e-13]} {RNA1509_1006, RNA1509_58}

Mlig011207.g4 {Length: 1626} {Pfam: Hsp20/alpha crystallin family [PF00011.19, score=97.9]} {Celegans: WBGene00008591, F08H9.3, Caenorhabditis elegans Protein F08H9.3 (F08H9.3) mRNA, complete cds., [RH, Score=52.4, Expect=2e-08]} {Smed: dd_Smed_v6_1039_0_1, [RH, Score=81.3, Expect=5e-18]} {Smes: dd_Smes_v1_40328_1_1, [RH, Score=81.6, Expect=5e-18]} {Smans: Smp_049300.3, [Score=48.1, Expect=9e-07]} {UniRef: UniRef50_H9LIX5, Small heat shock protein (Fragment) n=1 Tax=Crassostrea ariakensis TaxID=94323 RepID=H9LIX5_CRAAR, [Score=75.9, Expect=4e-14]} {RNA1509_1512}

Mlig011207.g1 {Length: 1622} {Pfam: Hsp20/alpha crystallin family [PF00011.19, score=41.6]} {Celegans: WBGene00008591, F08H9.3, Caenorhabditis elegans Protein F08H9.3 (F08H9.3) mRNA, complete cds., [RH, Score=53.1, Expect=6e-09]} {Smed: dd_Smed_v6_1039_0_1, [Score=65.5, Expect=7e-13]} {Smes: dd_Smes_v1_40328_1_1, [Score=65.9, Expect=7e-13]} {UniRef: UniRef50_G3GAE5, Small heat shock protein 24.1 n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=G3GAE5_MYTGA, [Score=60.8, Expect=7e-09]} {RNA1509_1512}
16. MligTCv3c-7730.0 Mlig002432.g2, Mlig002432.g1 8.71 Asexual_biased LMNA

Mlig002432.g2 {Length: 2587} {Pfam: Intermediate filament protein [PF00038.19, score=183.2]; Lamin Tail Domain [PF00932.17, score=43.3]; Septation ring formation regulator, EzrA [PF06160.10, score=17.7]} {Human: ENSG00000160789, LMNA, lamin A/C, [Score=127, Expect=3e-30]} {Dmel: FBgn0010397, LamC, Lamin C, [RH, Score=137, Expect=8e-34]; FBgn0002525, Lam, Lamin, [RH, Score=135, Expect=2e-33]} {Celegans: WBGene00002050, ifa-1, Caenorhabditis elegans Protein IFA-1, isoform c (ifa-1) mRNA, complete cds., [RH, Score=354, Expect=1e-114]} {Smed: dd_Smed_v6_3065_0_1, [Score=494, Expect=1e-168]; dd_Smed_v6_3871_0_1, [Score=476, Expect=1e-162]} {Smes: dd_Smes_v1_67483_1_1, [Score=492, Expect=1e-167]; dd_Smes_v1_34228_1_1, [Score=476, Expect=1e-162]} {Smans: Smp_170930.1, [Score=142, Expect=3e-36]} {UniRef: UniRef50_W0GAA8, Intermediate filament b-like protein n=8 Tax=Macrostomum lignano TaxID=282301 RepID=W0GAA8_9PLAT, [Score=735, Expect=0.0]} {RNA1509_109}

Mlig002432.g1 {Length: 2530} {Pfam: Intermediate filament protein [PF00038.19, score=183.2]; Lamin Tail Domain [PF00932.17, score=43.3]; Septation ring formation regulator, EzrA [PF06160.10, score=17.7]} {Human: ENSG00000160789, LMNA, lamin A/C, [Score=127, Expect=3e-30]} {Dmel: FBgn0010397, LamC, Lamin C, [RH, Score=137, Expect=8e-34]; FBgn0002525, Lam, Lamin, [RH, Score=135, Expect=2e-33]} {Celegans: WBGene00002050, ifa-1, Caenorhabditis elegans Protein IFA-1, isoform c (ifa-1) mRNA, complete cds., [RH, Score=354, Expect=1e-114]} {Smed: dd_Smed_v6_3065_0_1, [Score=494, Expect=1e-168]; dd_Smed_v6_3871_0_1, [Score=476, Expect=1e-162]} {Smes: dd_Smes_v1_67483_1_1, [Score=492, Expect=1e-167]; dd_Smes_v1_34228_1_1, [Score=476, Expect=1e-162]} {Smans: Smp_170930.1, [Score=142, Expect=3e-36]} {UniRef: UniRef50_W0GAA8, Intermediate filament b-like protein n=8 Tax=Macrostomum lignano TaxID=282301 RepID=W0GAA8_9PLAT, [Score=735, Expect=0.0]} {RNA1509_109}
17. MligTCv3c-562.3585 Mlig010057.g7, Mlig010057.g6, Mlig010057.g5, Mlig010057.g4, Mlig010057.g3, Mlig010057.g1, Mlig010057.g2 8.64

Mlig010057.g7 {Length: 885} {NoTransDecoderORF} {RNA1509_13494}

Mlig010057.g6 {Length: 885} {NoTransDecoderORF} {RNA1509_13494}

Mlig010057.g5 {Length: 797} {NoTransDecoderORF} {RNA1509_1068, RNA1509_15438, RNA1509_288, RNA1509_53006}

Mlig010057.g4 {Length: 886} {NoTransDecoderORF} {RNA1509_13494, RNA1509_15438, RNA1509_8471}

Mlig010057.g3 {Length: 886} {NoTransDecoderORF} {RNA1509_13494}

Mlig010057.g1 {Length: 886} {NoTransDecoderORF} {RNA1509_13494}

Mlig010057.g2 {Length: 886} {NoTransDecoderORF} {RNA1509_13494}
18. MligTCv3c-12248.2 Mlig009706.g2, Mlig009706.g3, Mlig009706.g1 8.57

Mlig009706.g2 {Length: 1150} {SignalP} {UniRef: UniRef50_UPI000698E7A2, PREDICTED: RNA-binding protein 12B-like isoform X1 n=4 Tax=Lingula unguis TaxID=7574 RepID=UPI000698E7A2, [Score=56.2, Expect=4e-07]} {RNA1509_28514}

Mlig009706.g3 {Length: 1531} {SignalP} {UniRef: UniRef50_UPI000698E7A2, PREDICTED: RNA-binding protein 12B-like isoform X1 n=4 Tax=Lingula unguis TaxID=7574 RepID=UPI000698E7A2, [Score=56.2, Expect=4e-07]} {RNA1509_28514}

Mlig009706.g1 {Length: 1517} {SignalP} {UniRef: UniRef50_UPI000698E7A2, PREDICTED: RNA-binding protein 12B-like isoform X1 n=4 Tax=Lingula unguis TaxID=7574 RepID=UPI000698E7A2, [Score=54.7, Expect=1e-06]} {RNA1509_28514}
19. MligTCv3c-562.9705 Mlig010912.g1, Mlig024083.g1 8.57 Gut; Asexual_biased; Sexual_biased; Xins TSPAN17

Mlig010912.g1 {Length: 1883} {Pfam: Tetraspanin family [PF00335.18, score=134.6]} {Human: ENSG00000048140, TSPAN17, tetraspanin 17, [Score=79.3, Expect=3e-16]} {Dmel: FBgn0035936, Tsp66E, Tetraspanin 66E, [Score=90.5, Expect=6e-21]} {Celegans: WBGene00006637, tsp-11, Caenorhabditis elegans Protein TSP-11 (tsp-11) mRNA, complete cds., [Score=69.3, Expect=2e-13]} {Smed: dd_Smed_v6_354_0_1, [RH, Score=144, Expect=2e-41]} {Smes: dd_Smes_v1_32297_1_1, [RH, Score=146, Expect=6e-42]; dd_Smes_v1_35779_1_1, [RH, Score=145, Expect=1e-41]} {Smans: Smp_075720.1, [Score=67.0, Expect=9e-14]; Smp_100080.1, [Score=65.9, Expect=7e-13]; Smp_017430.1, [Score=64.3, Expect=2e-12]} {UniRef: UniRef50_A0A1I8GD10, Tetraspanin n=1 Tax=Macrostomum lignano TaxID=282301 RepID=A0A1I8GD10_9PLAT, [Score=306, Expect=1e-101]} {RNA1509_2526, RNA1509_34119, RNA1509_55166, RNA1509_55530} {WURTZEL: Gut [dd_Smed_v6_354_0_1, tetraspanin 3 (TSPAN3)]}

Mlig024083.g1 {Length: 1699} {Pfam: Tetraspanin family [PF00335.18, score=134.6]} {Human: ENSG00000048140, TSPAN17, tetraspanin 17, [Score=79.3, Expect=3e-16]} {Dmel: FBgn0035936, Tsp66E, Tetraspanin 66E, [Score=90.5, Expect=6e-21]} {Celegans: WBGene00006637, tsp-11, Caenorhabditis elegans Protein TSP-11 (tsp-11) mRNA, complete cds., [Score=69.3, Expect=2e-13]} {Smed: dd_Smed_v6_354_0_1, [RH, Score=144, Expect=2e-41]} {Smes: dd_Smes_v1_32297_1_1, [RH, Score=146, Expect=6e-42]; dd_Smes_v1_35779_1_1, [RH, Score=145, Expect=1e-41]} {Smans: Smp_075720.1, [Score=67.0, Expect=9e-14]; Smp_100080.1, [Score=65.9, Expect=7e-13]; Smp_017430.1, [Score=64.3, Expect=2e-12]} {UniRef: UniRef50_A0A1I8GD10, Tetraspanin n=1 Tax=Macrostomum lignano TaxID=282301 RepID=A0A1I8GD10_9PLAT, [Score=306, Expect=1e-101]} {RNA1509_333, RNA1509_34119, RNA1509_406, RNA1509_59213}
20. MligTCv3c-562.1533 Mlig011997.g1 8.47 Gamma neoblasts; Xins ACTG1 Mlig011997.g1 {Length: 1767} {Pfam: Actin [PF00022.17, score=498.6]} {Human: ENSG00000184009, ACTG1, actin, gamma 1, [RH, Score=740, Expect=0.0]; ENSG00000075624, ACTB, actin, beta, [RH, Score=738, Expect=0.0]; ENSG00000163017, ACTG2, actin, gamma 2, smooth muscle, enteric, [RH, Score=719, Expect=0.0]; ENSG00000107796, ACTA2, actin, alpha 2, smooth muscle, aorta, [RH, Score=718, Expect=0.0]; ENSG00000143632, ACTA1, actin, alpha 1, skeletal muscle, [RH, Score=717, Expect=0.0]; ENSG00000159251, ACTC1, actin, alpha, cardiac muscle 1, [RH, Score=716, Expect=0.0]; ENSG00000169067, ACTBL2, actin, beta-like 2, [RH, Score=707, Expect=0.0]} {Dmel: FBgn0000042, Act5C, Actin 5C, [RH, Score=742, Expect=0.0]; FBgn0000043, Act42A, Actin 42A, [RH, Score=741, Expect=0.0]; FBgn0000046, Act87E, Actin 87E, [RH, Score=739, Expect=0.0]; FBgn0000044, Act57B, Actin 57B, [RH, Score=738, Expect=0.0]; FBgn0000047, Act88F, Actin 88F, [RH, Score=736, Expect=0.0]; FBgn0000045, Act79B, Actin 79B, [RH, Score=727, Expect=0.0]} {Celegans: WBGene00000066, act-4, Caenorhabditis elegans Protein ACT-4, isoform a., [RH, Score=742, Expect=0.0]} {Smed: dd_Smed_v6_3_0_1, [RH, Score=742, Expect=0.0]} {Smes: dd_Smes_v1_31847_1_1, [RH, Score=743, Expect=0.0]} {Smans: Smp_046600.1, [RH, Score=743, Expect=0.0]; Smp_183710.1, [RH, Score=738, Expect=0.0]; Smp_202970.1, [RH, Score=713, Expect=0.0]} {UniRef: UniRef50_P60709, Actin, cytoplasmic 1 n=1357 Tax=Eukaryota TaxID=2759 RepID=ACTB_HUMAN, [Score=738, Expect=0.0]} {RNA1509_23256, RNA1509_25656, RNA1509_424, RNA1509_479, RNA1509_54537} {WURTZEL: Gamma neoblasts [dd_Smed_v6_3_0_1, actin, beta (ACTB)]}
First Previous 1 2 3 Next Last
Berezikov Lab - 2016-2017 © ERIBA