M. lignano Neoblast Screen 2016.
Mlig_RNA_3_7_v3 transcriptome version. Transcriptional signatures of somatic neoblasts and germline cells in Macrostomum lignano. (2016) Grudniewska M*, Mouton S*, Simanov S, Beltman F, Grelling M, de Mulder K, Arindrarto W, Weissert P, van der Elst S, Berezikov E. eLife 2016;5:e20607. Home Download

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Found 1163 results for log2(Irr24h/Irr0h) >= 1 and fdr <= 0.05. Showing entries 1-20.

Graph Cluster Transcripts Mean logCPM Classification Smed/Human type Human gene Annotation
1. MligTCv3c-1729.7 Mlig007116.g3 12.83 Mlig007116.g3 {Length: 7259} {NoTransDecoderORF} {rRNA: 28s_rRNA,euk, score=3189.0}
2. MligTCv3c-1729.10 Mlig007116.g29 12.29 Mlig007116.g29 {Length: 5487} {NoTransDecoderORF} {rRNA: 18s_rRNA,euk, score=1506.2} {RNA1509_3}
3. MligTCv3c-1729.8 Mlig007116.g18 12.11 Mlig007116.g18 {Length: 4099} {NoTransDecoderORF} {RNA1509_3}
4. MligTCv3c-1729.13 Mlig007116.g25 11.84 Mlig007116.g25 {Length: 7074} {rRNA: 28s_rRNA,euk, score=2553.7} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.25, score=131.0]} {Smed: dd_Smed_v6_16441_0_5, [RH, Score=115, Expect=2e-27]} {Smes: dd_Smes_v1_38202_2_1, [RH, Score=146, Expect=4e-36]} {Smans: Smp_199470.1, [Score=92.4, Expect=2e-19]; Smp_191250.1, [Score=87.8, Expect=4e-18]} {UniRef: UniRef50_Q76IN8, Reverse transcriptase (Fragment) n=1 Tax=Ciona intestinalis TaxID=7719 RepID=Q76IN8_CIOIN, [Score=283, Expect=9e-82]}
5. MligTCv3c-1729.9 Mlig024510.g16 11.62 Mlig024510.g16 {Length: 3739} {TRANSSPLICED} {NoTransDecoderORF} {rRNA: 18s_rRNA,euk, score=1117.4} {RNA1509_3}
6. MligTCv3c-4698.8 Mlig014430.g1 10.99 Mlig014430.g1 {Length: 873} {SignalP} {RNA1509_12716, RNA1509_19267, RNA1509_19639, RNA1509_24892, RNA1509_26026, RNA1509_26984, RNA1509_33982, RNA1509_39274, RNA1509_42125, RNA1509_4287, RNA1509_43739, RNA1509_50, RNA1509_57, RNA1509_6481, RNA1509_7128, RNA1509_7208}
7. MligTCv3c-4698.9 Mlig017551.g1 10.73 Mlig017551.g1 {Length: 800} {SignalP} {RNA1509_33982}
8. MligTCv3c-1729.22 Mlig025773.g2, Mlig007116.g22, Mlig007116.g32 9.2

Mlig025773.g2 {Length: 1415} {Smed: dd_Smed_v6_14495_0_1, [RH, Score=56.2, Expect=2e-09]} {Smes: dd_Smes_v1_38202_2_1, [Score=122, Expect=2e-30]} {Smans: Smp_188880.1, [RH, Score=116, Expect=3e-29]} {UniRef: UniRef50_Q76IP0, Reverse transcriptase n=1 Tax=Ciona intestinalis TaxID=7719 RepID=Q76IP0_CIOIN, [Score=178, Expect=2e-47]} {RNA1509_52941}

Mlig007116.g22 {Length: 2478} {rRNA: 28s_rRNA,euk, score=271.0} {Smed: dd_Smed_v6_14495_0_1, [RH, Score=56.2, Expect=2e-09]} {Smes: dd_Smes_v1_38202_2_1, [Score=122, Expect=2e-30]} {Smans: Smp_188880.1, [RH, Score=116, Expect=3e-29]} {UniRef: UniRef50_Q76IP0, Reverse transcriptase n=1 Tax=Ciona intestinalis TaxID=7719 RepID=Q76IP0_CIOIN, [Score=178, Expect=2e-47]} {RNA1509_1780}

Mlig007116.g32 {Length: 2476} {rRNA: 28s_rRNA,euk, score=284.7} {Smed: dd_Smed_v6_14495_0_1, [RH, Score=56.2, Expect=2e-09]} {Smes: dd_Smes_v1_38202_2_1, [Score=122, Expect=2e-30]} {Smans: Smp_188880.1, [RH, Score=116, Expect=3e-29]} {UniRef: UniRef50_Q76IP0, Reverse transcriptase n=1 Tax=Ciona intestinalis TaxID=7719 RepID=Q76IP0_CIOIN, [Score=178, Expect=2e-47]} {RNA1509_1780}
9. MligTCv3c-6707.1 Mlig032079.g5, Mlig032079.g1 9.09 Neural (ciliated); Sexual_biased; Xins

Mlig032079.g5 {Length: 938} {SignalP} {Smed: dd_Smed_v6_4472_0_1, [RH, Score=50.4, Expect=3e-09]; dd_Smed_v6_23342_0_1, [RH, Score=50.1, Expect=4e-09]} {Smes: dd_Smes_v1_27885_1_1, [Score=49.7, Expect=1e-08]} {Smans: Smp_019350.1, [Score=47.4, Expect=3e-08]} {RNA1509_313, RNA1509_32450, RNA1509_340, RNA1509_40634}

Mlig032079.g1 {Length: 938} {SignalP} {Smed: dd_Smed_v6_4472_0_1, [RH, Score=50.4, Expect=3e-09]; dd_Smed_v6_23342_0_1, [RH, Score=50.1, Expect=4e-09]} {Smes: dd_Smes_v1_27885_1_1, [Score=49.7, Expect=1e-08]} {Smans: Smp_019350.1, [Score=47.4, Expect=3e-08]} {RNA1509_340} {WURTZEL: Neural (ciliated) [dd_Smed_v6_4472_0_1, NA]}
10. MligTCv3c-6614.1 Mlig026053.g1 9.04 Asexual_biased; Xins CTSL1 Mlig026053.g1 {Length: 1475} {Pfam: Papain family cysteine protease [PF00112.21, score=291.9]; Cathepsin propeptide inhibitor domain (I29) [PF08246.10, score=41.6]; Peptidase C1-like family [PF03051.13, score=27.9]} {Human: ENSG00000135047, CTSL1, cathepsin L1, [Score=336, Expect=1e-115]; ENSG00000136943, CTSL2, cathepsin L2, [Score=330, Expect=1e-113]} {Dmel: FBgn0013770, Cp1, Cysteine proteinase-1, [Score=347, Expect=1e-119]} {Celegans: WBGene00000776, cpl-1, Caenorhabditis elegans Protein CPL-1, isoform a., [Score=323, Expect=1e-110]} {Smed: dd_Smed_v6_48_0_1, [Score=390, Expect=1e-137]; dd_Smed_v6_267_0_1, [Score=386, Expect=1e-135]} {Smes: dd_Smes_v1_54742_1_1, [Score=392, Expect=1e-137]; dd_Smes_v1_37198_1_1, [Score=386, Expect=1e-135]} {Smans: Smp_210500.1, [Score=302, Expect=1e-102]} {UniRef: UniRef50_C3XVX8, Putative uncharacterized protein n=12 Tax=Bilateria TaxID=33213 RepID=C3XVX8_BRAFL, [Score=387, Expect=1e-133]} {RNA1509_124, RNA1509_189, RNA1509_29901, RNA1509_34333, RNA1509_392, RNA1509_5554}
11. MligTCv3c-1729.18 Mlig007116.g20 8.84 Mlig007116.g20 {Length: 903} {NoTransDecoderORF} {RNA1509_35901}
12. MligTCv3c-10806.1 Mlig025236.g1, Mlig027113.g1 8.81

Mlig025236.g1 {Length: 649} {SignalP} {RNA1509_20075, RNA1509_53941}

Mlig027113.g1 {Length: 675} {SignalP} {RNA1509_15995, RNA1509_20075, RNA1509_433}
13. MligTCv3c-18818.0 Mlig007282.g1 8.76 AHCY Mlig007282.g1 {Length: 1991} {Pfam: S-adenosyl-L-homocysteine hydrolase [PF05221.15, score=452.0]; S-adenosyl-L-homocysteine hydrolase, NAD binding domain [PF00670.19, score=268.3]; D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain [PF02826.17, score=35.0]; Acetohydroxy acid isomeroreductase, NADPH-binding domain [PF07991.10, score=26.0]; Putative NAD(P)-binding [PF13241.4, score=19.9]} {Human: ENSG00000101444, AHCY, adenosylhomocysteinase, [RH, Score=683, Expect=0.0]} {Dmel: FBgn0014455, Ahcy13, Adenosylhomocysteinase at 13, [RH, Score=717, Expect=0.0]} {Celegans: WBGene00019322, ahcy-1, Caenorhabditis elegans Protein AHCY-1 (ahcy-1) mRNA, complete cds., [RH, Score=723, Expect=0.0]} {Smed: dd_Smed_v6_526_0_1, [RH, Score=743, Expect=0.0]} {Smes: dd_Smes_v1_32401_1_1, [RH, Score=743, Expect=0.0]} {Smans: Smp_028440.1, [RH, Score=715, Expect=0.0]} {UniRef: UniRef50_A0A1J1HTJ9, CLUMA_CG004401, isoform A n=1 Tax=Clunio marinus TaxID=568069 RepID=A0A1J1HTJ9_9DIPT, [Score=719, Expect=0.0]} {RNA1509_1422, RNA1509_16178, RNA1509_1799, RNA1509_43410}
14. MligTCv3c-9911.7 Mlig017064.g5, Mlig017064.g3, Mlig017064.g13 8.71 MOXD1

Mlig017064.g5 {Length: 2329} {SignalP} {Pfam: Copper type II ascorbate-dependent monooxygenase, N-terminal domain [PF01082.18, score=94.0]; Copper type II ascorbate-dependent monooxygenase, C-terminal domain [PF03712.13, score=71.5]} {Human: ENSG00000079931, MOXD1, monooxygenase, DBH-like 1, [Score=120, Expect=3e-28]; ENSG00000123454, DBH, dopamine beta-hydroxylase (dopamine beta-monooxygenase), [Score=117, Expect=4e-27]} {Dmel: FBgn0010329, Tbh, Tyramine beta hydroxylase, [Score=129, Expect=4e-31]} {Celegans: WBGene00006541, tbh-1, Caenorhabditis elegans Protein TBH-1, isoform b., [Score=137, Expect=2e-34]} {Smed: dd_Smed_v6_42610_0_1, [Score=118, Expect=4e-29]} {Smes: dd_Smes_v1_37024_1_1, [Score=122, Expect=2e-29]} {Smans: Smp_137640.1, [Score=107, Expect=6e-27]} {UniRef: UniRef50_UPI00069826A6, PREDICTED: MOXD1 homolog 1-like isoform X1 n=3 Tax=Lingula unguis TaxID=7574 RepID=UPI00069826A6, [Score=363, Expect=1e-115]} {RNA1509_127}

Mlig017064.g3 {Length: 2365} {SignalP} {Pfam: Copper type II ascorbate-dependent monooxygenase, N-terminal domain [PF01082.18, score=94.0]; Copper type II ascorbate-dependent monooxygenase, C-terminal domain [PF03712.13, score=71.5]} {Human: ENSG00000079931, MOXD1, monooxygenase, DBH-like 1, [Score=120, Expect=3e-28]; ENSG00000123454, DBH, dopamine beta-hydroxylase (dopamine beta-monooxygenase), [Score=117, Expect=4e-27]} {Dmel: FBgn0010329, Tbh, Tyramine beta hydroxylase, [Score=129, Expect=4e-31]} {Celegans: WBGene00006541, tbh-1, Caenorhabditis elegans Protein TBH-1, isoform b., [Score=137, Expect=2e-34]} {Smed: dd_Smed_v6_42610_0_1, [Score=118, Expect=4e-29]} {Smes: dd_Smes_v1_37024_1_1, [Score=122, Expect=2e-29]} {Smans: Smp_137640.1, [Score=107, Expect=6e-27]} {UniRef: UniRef50_UPI00069826A6, PREDICTED: MOXD1 homolog 1-like isoform X1 n=3 Tax=Lingula unguis TaxID=7574 RepID=UPI00069826A6, [Score=363, Expect=1e-115]} {RNA1509_127}

Mlig017064.g13 {Length: 2328} {TRANSSPLICED} {SignalP} {Pfam: Copper type II ascorbate-dependent monooxygenase, N-terminal domain [PF01082.18, score=93.7]; Copper type II ascorbate-dependent monooxygenase, C-terminal domain [PF03712.13, score=71.2]} {Human: ENSG00000079931, MOXD1, monooxygenase, DBH-like 1, [Score=120, Expect=4e-28]; ENSG00000123454, DBH, dopamine beta-hydroxylase (dopamine beta-monooxygenase), [Score=117, Expect=6e-27]} {Dmel: FBgn0010329, Tbh, Tyramine beta hydroxylase, [Score=128, Expect=8e-31]} {Celegans: WBGene00006541, tbh-1, Caenorhabditis elegans Protein TBH-1, isoform b., [Score=137, Expect=3e-34]} {Smed: dd_Smed_v6_42610_0_1, [Score=118, Expect=6e-29]} {Smes: dd_Smes_v1_37024_1_1, [Score=123, Expect=2e-29]} {Smans: Smp_137640.1, [Score=107, Expect=7e-27]; Smp_163900.1, [Score=102, Expect=5e-23]} {UniRef: UniRef50_UPI00069826A6, PREDICTED: MOXD1 homolog 1-like isoform X1 n=3 Tax=Lingula unguis TaxID=7574 RepID=UPI00069826A6, [Score=363, Expect=1e-114]} {RNA1509_127, RNA1509_16513, RNA1509_19891, RNA1509_42226, RNA1509_57698}
15. MligTCv3c-1729.5 Mlig021084.g1 8.62 X1 Mlig021084.g1 {Length: 5675} {rRNA: 18s_rRNA,euk, score=364.5} {Pfam: Reverse transcriptase (RNA-dependent DNA polymerase) [PF00078.25, score=43.0]} {Smed: dd_Smed_v6_13734_0_19, [Score=61.6, Expect=5e-10]} {Smes: dd_Smes_v1_41637_1_2, [RH, Score=89.7, Expect=1e-18]} {Smans: Smp_187770.1, [Score=50.1, Expect=8e-07]} {UniRef: UniRef50_Q76IN8, Reverse transcriptase (Fragment) n=1 Tax=Ciona intestinalis TaxID=7719 RepID=Q76IN8_CIOIN, [Score=149, Expect=2e-35]} {RNA1509_22337}
16. MligTCv3c-2073.20 Mlig001477.g5 8.62 QRICH2 Mlig001477.g5 {Length: 1520} {Human: ENSG00000129646, QRICH2, glutamine rich 2, [Score=48.5, Expect=3e-07]} {UniRef: UniRef50_A0A0F8CXG0, Mirror-image polydactyly 1 protein n=3 Tax=Larimichthys crocea TaxID=215358 RepID=A0A0F8CXG0_LARCR, [Score=87.0, Expect=8e-19]} {RNA1509_246}
17. MligTCv3c-6614.0 Mlig013052.g1 8.48 Asexual_biased; Xins CTSL1 Mlig013052.g1 {Length: 2757} {SignalP} {Pfam: Papain family cysteine protease [PF00112.21, score=291.8]; Cathepsin propeptide inhibitor domain (I29) [PF08246.10, score=55.3]; Peptidase C1-like family [PF03051.13, score=27.5]} {Human: ENSG00000135047, CTSL1, cathepsin L1, [RH, Score=350, Expect=1e-120]; ENSG00000136943, CTSL2, cathepsin L2, [RH, Score=350, Expect=1e-120]} {Dmel: FBgn0013770, Cp1, Cysteine proteinase-1, [Score=359, Expect=1e-123]} {Celegans: WBGene00000776, cpl-1, Caenorhabditis elegans Protein CPL-1, isoform a., [RH, Score=335, Expect=1e-114]} {Smed: dd_Smed_v6_48_0_1, [RH, Score=416, Expect=1e-146]; dd_Smed_v6_267_0_1, [RH, Score=409, Expect=1e-144]} {Smes: dd_Smes_v1_54742_1_1, [RH, Score=417, Expect=1e-147]; dd_Smes_v1_37198_1_1, [RH, Score=406, Expect=1e-143]} {Smans: Smp_210500.1, [Score=305, Expect=1e-103]} {UniRef: UniRef50_UPI00077F95D8, UPI00077F95D8 related cluster n=1 Tax=unknown TaxID= RepID=UPI00077F95D8, [Score=401, Expect=1e-133]} {RNA1509_29064, RNA1509_39935, RNA1509_51476, RNA1509_8088, RNA1509_81}
18. MligTCv3c-2073.1 Mlig007552.g3 8.46 Mlig007552.g3 {Length: 3049} {RNA1509_246}
19. MligTCv3c-1729.15 Mlig026799.g2 8.44 Mlig026799.g2 {Length: 2388} {NoTransDecoderORF} {rRNA: 28s_rRNA,euk, score=1422.3} {RNA1509_1}
20. MligTCv3c-6707.6 Mlig008601.g1 8.36 Sexual_biased Mlig008601.g1 {Length: 885} {SignalP} {Smed: dd_Smed_v6_23342_0_1, [RH, Score=48.9, Expect=1e-08]} {Smes: dd_Smes_v1_27885_1_1, [Score=44.3, Expect=1e-06]} {Smans: Smp_019350.1, [Score=47.4, Expect=3e-08]} {RNA1509_17183, RNA1509_33478, RNA1509_340}
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