M. lignano Neoblast Screen 2016.
Mlig_RNA_3_7_v3 transcriptome version. Transcriptional signatures of somatic neoblasts and germline cells in Macrostomum lignano. (2016) Grudniewska M*, Mouton S*, Simanov S, Beltman F, Grelling M, de Mulder K, Arindrarto W, Weissert P, van der Elst S, Berezikov E. eLife 2016;5:e20607. Home Download

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Found 203 results for log2(Irr72h/Irr24h) between 0 and 1 and fdr <= 0.05. Showing entries 1-20.

Graph Cluster Transcripts Mean logCPM Classification Smed/Human type Human gene Annotation
1. MligTCv3c-2073.14 Mlig005251.g1, Mlig027748.g1 11.57

Mlig005251.g1 {Length: 688} {SignalP} {RNA1509_30861}

Mlig027748.g1 {Length: 1504} {SignalP} {RNA1509_1876, RNA1509_207, RNA1509_758}
2. MligTCv3c-2073.28 Mlig058014.g1 9.78 Mlig058014.g1 {Length: 2494} {SignalP} {RNA1509_1811, RNA1509_29222, RNA1509_4694, RNA1509_4816}
3. MligTCv3c-10806.1 Mlig025236.g1, Mlig027113.g1 8.81

Mlig025236.g1 {Length: 649} {SignalP} {RNA1509_20075, RNA1509_53941}

Mlig027113.g1 {Length: 675} {SignalP} {RNA1509_15995, RNA1509_20075, RNA1509_433}
4. MligTCv3c-2073.9 Mlig030183.g2 8.43 Mlig030183.g2 {Length: 689} {SignalP} {RNA1509_30861}
5. MligTCv3c-9916.0 Mlig018936.g1, Mlig005507.g1, Mlig018936.g2 7.66 Muscle; Asexual_biased; Xins TPM1

Mlig018936.g1 {Length: 1701} {Pfam: Tropomyosin [PF00261.18, score=279.9]; Tropomyosin like [PF12718.5, score=105.0]; IncA protein [PF04156.12, score=28.1]; Laminin Domain II [PF06009.10, score=23.2]; Protein of unknown function (DUF1664) [PF07889.10, score=18.9]; Myosin tail [PF01576.17, score=17.6]; Mitotic checkpoint protein [PF05557.11, score=17.1]} {Human: ENSG00000140416, TPM1, tropomyosin 1 (alpha), [Score=182, Expect=6e-55]} {Dmel: FBgn0003721, Tm1, Tropomyosin 1, [Score=245, Expect=9e-80]} {Celegans: WBGene00002978, lev-11, Caenorhabditis elegans Protein LEV-11, isoform e., [Score=231, Expect=1e-74]} {Smed: dd_Smed_v6_405_0_1, [RH, Score=327, Expect=1e-112]} {Smes: dd_Smes_v1_88461_1_1, [RH, Score=327, Expect=1e-112]} {Smans: Smp_044010.2, [RH, Score=318, Expect=1e-109]} {UniRef: UniRef50_O44119-2, Isoform Fast muscle type of Tropomyosin n=112 Tax=Bilateria TaxID=33213 RepID=O44119-2, [Score=271, Expect=1e-87]} {RNA1509_23449, RNA1509_2461, RNA1509_39465, RNA1509_907}

Mlig005507.g1 {Length: 339} {NoTransDecoderORF} {RNA1509_907}

Mlig018936.g2 {Length: 1623} {Pfam: Tropomyosin [PF00261.18, score=279.9]; Tropomyosin like [PF12718.5, score=105.0]; IncA protein [PF04156.12, score=28.1]; Laminin Domain II [PF06009.10, score=23.2]; Protein of unknown function (DUF1664) [PF07889.10, score=18.9]; Myosin tail [PF01576.17, score=17.6]; Mitotic checkpoint protein [PF05557.11, score=17.1]} {Human: ENSG00000140416, TPM1, tropomyosin 1 (alpha), [Score=182, Expect=6e-55]} {Dmel: FBgn0003721, Tm1, Tropomyosin 1, [Score=245, Expect=9e-80]} {Celegans: WBGene00002978, lev-11, Caenorhabditis elegans Protein LEV-11, isoform e., [Score=231, Expect=1e-74]} {Smed: dd_Smed_v6_405_0_1, [RH, Score=327, Expect=1e-112]} {Smes: dd_Smes_v1_88461_1_1, [RH, Score=327, Expect=1e-112]} {Smans: Smp_044010.2, [RH, Score=318, Expect=1e-109]} {UniRef: UniRef50_O44119-2, Isoform Fast muscle type of Tropomyosin n=112 Tax=Bilateria TaxID=33213 RepID=O44119-2, [Score=271, Expect=1e-87]} {RNA1509_29844} {WURTZEL: Muscle [dd_Smed_v6_405_0_1, tropomyosin 1 (alpha) (TPM1)]}
6. MligTCv3c-17848.0 Mlig026306.g1 7.56 Mlig026306.g1 {Length: 1995} {Pfam: Cornifin (SPRR) family [PF02389.13, score=43.4]} {UniRef: UniRef50_A8DVN1, Predicted protein n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A8DVN1_NEMVE, [Score=74.3, Expect=4e-12]} {RNA1509_11780, RNA1509_18409, RNA1509_31432, RNA1509_46654, RNA1509_52948}
7. MligTCv3c-9376.0 Mlig002479.g1 7.32 Mlig002479.g1 {Length: 653} {SignalP} {RNA1509_10341, RNA1509_11051, RNA1509_7451}
8. MligTCv3c-17848.2 Mlig014985.g1 7.16 Mlig014985.g1 {Length: 1308} {Pfam: Cornifin (SPRR) family [PF02389.13, score=23.5]} {RNA1509_15778, RNA1509_2189, RNA1509_48704, RNA1509_8636}
9. MligTCv3c-14432.2 Mlig032370.g2 7 Mlig032370.g2 {Length: 839} {SignalP} {RNA1509_21417, RNA1509_41776}
10. MligTCv3c-18955.1 Mlig033649.g1 6.87 Mlig033649.g1 {Length: 1241} {Pfam: Putative CRISPR-associated protein (Cas_VVA1548) [PF09652.8, score=24.8]} {RNA1509_13446, RNA1509_36840, RNA1509_42552, RNA1509_4845, RNA1509_7701}
11. MligTCv3c-19097.2 Mlig028356.g2, Mlig006803.g1 6.83 LPHN2; LPHN3

Mlig028356.g2 {Length: 9831} {SignalP} {Pfam: Galactose binding lectin domain [PF02140.16, score=139.1]} {Human: ENSG00000117114, LPHN2, latrophilin 2, [Score=72.4, Expect=1e-11]; ENSG00000150471, LPHN3, latrophilin 3, [Score=70.9, Expect=4e-11]} {Dmel: FBgn0033313, Cirl, Calcium-independent receptor for alpha-latrotoxin, [Score=71.6, Expect=1e-11]} {Celegans: WBGene00009304, eva-1, Caenorhabditis elegans Protein EVA-1, isoform a (eva-1) mRNA, complete cds., [RH, Score=53.9, Expect=1e-06]} {UniRef: UniRef50_UPI000947FEDE, UPI000947FEDE related cluster n=1 Tax=unknown TaxID= RepID=UPI000947FEDE, [Score=109, Expect=4e-21]; UniRef50_C3YYD1, Putative uncharacterized protein n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3YYD1_BRAFL, [Score=109, Expect=3e-22]; UniRef50_K1RFT9, L-rhamnose-binding lectin CSL3 (Fragment) n=3 Tax=Crassostrea gigas TaxID=29159 RepID=K1RFT9_CRAGI, [Score=108, Expect=6e-24]} {RNA1509_14650, RNA1509_19909, RNA1509_22643, RNA1509_523, RNA1509_950}

Mlig006803.g1 {Length: 12493} {SignalP} {Pfam: Galactose binding lectin domain [PF02140.16, score=138.1]} {Human: ENSG00000150471, LPHN3, latrophilin 3, [Score=65.1, Expect=3e-09]; ENSG00000117114, LPHN2, latrophilin 2, [Score=64.3, Expect=5e-09]; ENSG00000072071, LPHN1, latrophilin 1, [Score=62.0, Expect=2e-08]} {Dmel: FBgn0033313, Cirl, Calcium-independent receptor for alpha-latrotoxin, [Score=58.9, Expect=1e-07]} {Celegans: WBGene00009304, eva-1, Caenorhabditis elegans Protein EVA-1, isoform a (eva-1) mRNA, complete cds., [RH, Score=54.3, Expect=1e-06]} {UniRef: UniRef50_K1RFT9, L-rhamnose-binding lectin CSL3 (Fragment) n=3 Tax=Crassostrea gigas TaxID=29159 RepID=K1RFT9_CRAGI, [Score=95.9, Expect=2e-19]; UniRef50_UPI000947FEDE, UPI000947FEDE related cluster n=1 Tax=unknown TaxID= RepID=UPI000947FEDE, [Score=95.9, Expect=8e-17]} {RNA1509_28662, RNA1509_47338, RNA1509_49162}
12. MligTCv3c-18955.0 Mlig008666.g2 6.83 Mlig008666.g2 {Length: 1238} {SignalP} {RNA1509_3560}
13. MligTCv3c-16492.0 Mlig023512.g1, Mlig023512.g2 6.69 Muscle; Sexual_biased; Xins TNNT2

Mlig023512.g1 {Length: 2080} {Pfam: Troponin [PF00992.18, score=41.8]} {Human: ENSG00000118194, TNNT2, troponin T type 2 (cardiac), [RH, Score=55.8, Expect=2e-08]} {Dmel: FBgn0004169, up, upheld, [RH, Score=82.8, Expect=3e-17]} {Celegans: WBGene00006587, tnt-2, Caenorhabditis elegans Protein TNT-2, isoform a., [RH, Score=67.0, Expect=5e-12]} {Smed: dd_Smed_v6_375_0_1, [RH, Score=139, Expect=2e-38]} {Smes: dd_Smes_v1_77940_1_1, [RH, Score=139, Expect=2e-38]} {Smans: Smp_179810.1, [RH, Score=150, Expect=7e-43]} {UniRef: UniRef50_A0A068X7D4, Oncosphere protein Tso22e,oncosphere protein Tso22d,oncosphere protein Tso22c,oncosphere protein Tso22b,oncosphere protein Tso22a n=8 Tax=Eucestoda TaxID=6200 RepID=A0A068X7D4_HYMMI, [Score=164, Expect=2e-45]} {RNA1509_801} {WURTZEL: Muscle [dd_Smed_v6_375_0_1, RAB28, member RAS oncogene family (RAB28)]}

Mlig023512.g2 {Length: 2057} {Pfam: Troponin [PF00992.18, score=41.6]} {Human: ENSG00000118194, TNNT2, troponin T type 2 (cardiac), [RH, Score=55.5, Expect=2e-08]} {Dmel: FBgn0004169, up, upheld, [RH, Score=82.8, Expect=1e-17]} {Celegans: WBGene00006587, tnt-2, Caenorhabditis elegans Protein TNT-2, isoform a., [RH, Score=67.0, Expect=2e-12]} {Smed: dd_Smed_v6_375_0_1, [RH, Score=139, Expect=5e-39]} {Smes: dd_Smes_v1_77940_1_1, [RH, Score=139, Expect=7e-39]} {Smans: Smp_179810.1, [RH, Score=149, Expect=3e-43]} {UniRef: UniRef50_A0A068X7D4, Oncosphere protein Tso22e,oncosphere protein Tso22d,oncosphere protein Tso22c,oncosphere protein Tso22b,oncosphere protein Tso22a n=8 Tax=Eucestoda TaxID=6200 RepID=A0A068X7D4_HYMMI, [Score=164, Expect=7e-46]} {RNA1509_801} {WURTZEL: Muscle [dd_Smed_v6_375_0_1, RAB28, member RAS oncogene family (RAB28)]}
14. MligTCv3c-17848.1 Mlig023130.g1 6.68 Mlig023130.g1 {Length: 2440} {RNA1509_56361}
15. MligTCv3c-14432.1 Mlig032370.g1 6.62 Mlig032370.g1 {Length: 878} {SignalP} {RNA1509_3881, RNA1509_43586}
16. MligTCv3c-16401.0 Mlig023507.g3, Mlig023507.g4, Mlig023507.g2 6.62 Neural (non-ciliated) SKI

Mlig023507.g3 {Length: 3780} {Pfam: SKI/SNO/DAC family [PF02437.15, score=106.2]; c-SKI Smad4 binding domain [PF08782.8, score=93.1]} {Human: ENSG00000157933, SKI, v-ski sarcoma viral oncogene homolog (avian), [RH, Score=192, Expect=9e-52]} {Dmel: FBgn0085450, Snoo, Sno oncogene, [Score=165, Expect=3e-42]} {Smed: dd_Smed_v6_10921_0_1, [RH, Score=147, Expect=1e-37]; dd_Smed_v6_9053_0_1, [RH, Score=145, Expect=6e-40]} {Smes: dd_Smes_v1_36272_1_2, [RH, Score=160, Expect=1e-41]} {Smans: Smp_123000.2, [Score=83.2, Expect=1e-16]; Smp_123000.1, [Score=82.4, Expect=2e-16]} {UniRef: UniRef50_UPI000674DA88, PREDICTED: ski oncogene-like n=1 Tax=Biomphalaria glabrata TaxID=6526 RepID=UPI000674DA88, [Score=204, Expect=2e-54]} {RNA1509_989}

Mlig023507.g4 {Length: 4040} {Pfam: SKI/SNO/DAC family [PF02437.15, score=106.2]; c-SKI Smad4 binding domain [PF08782.8, score=93.1]} {Human: ENSG00000157933, SKI, v-ski sarcoma viral oncogene homolog (avian), [RH, Score=192, Expect=9e-52]} {Dmel: FBgn0085450, Snoo, Sno oncogene, [Score=165, Expect=3e-42]} {Smed: dd_Smed_v6_10921_0_1, [RH, Score=147, Expect=1e-37]; dd_Smed_v6_9053_0_1, [RH, Score=145, Expect=6e-40]} {Smes: dd_Smes_v1_36272_1_2, [RH, Score=160, Expect=1e-41]} {Smans: Smp_123000.2, [Score=83.2, Expect=1e-16]; Smp_123000.1, [Score=82.4, Expect=2e-16]} {UniRef: UniRef50_UPI000674DA88, PREDICTED: ski oncogene-like n=1 Tax=Biomphalaria glabrata TaxID=6526 RepID=UPI000674DA88, [Score=204, Expect=2e-54]} {RNA1509_989}

Mlig023507.g2 {Length: 3783} {Pfam: SKI/SNO/DAC family [PF02437.15, score=106.2]; c-SKI Smad4 binding domain [PF08782.8, score=93.1]} {Human: ENSG00000157933, SKI, v-ski sarcoma viral oncogene homolog (avian), [RH, Score=192, Expect=9e-52]} {Dmel: FBgn0085450, Snoo, Sno oncogene, [Score=165, Expect=3e-42]} {Smed: dd_Smed_v6_10921_0_1, [RH, Score=147, Expect=1e-37]; dd_Smed_v6_9053_0_1, [RH, Score=145, Expect=6e-40]} {Smes: dd_Smes_v1_36272_1_2, [RH, Score=160, Expect=1e-41]} {Smans: Smp_123000.2, [Score=83.2, Expect=1e-16]; Smp_123000.1, [Score=82.4, Expect=2e-16]} {UniRef: UniRef50_UPI000674DA88, PREDICTED: ski oncogene-like n=1 Tax=Biomphalaria glabrata TaxID=6526 RepID=UPI000674DA88, [Score=204, Expect=2e-54]} {RNA1509_989} {WURTZEL: Neural (non-ciliated) [dd_Smed_v6_10921_0_1, v-ski sarcoma viral oncogene homolog (avian) (SKI)]}
17. MligTCv3c-13391.1 Mlig024969.g1, Mlig009552.g1 6.47 Xins CDC42

Mlig024969.g1 {Length: 1895} {TRANSSPLICED} {Pfam: Ras family [PF00071.20, score=187.6]; Ras of Complex, Roc, domain of DAPkinase [PF08477.11, score=70.0]; ADP-ribosylation factor family [PF00025.19, score=26.4]} {Human: ENSG00000070831, CDC42, cell division cycle 42 (GTP binding protein, 25kDa), [RH, Score=333, Expect=1e-118]} {Dmel: FBgn0010341, Cdc42, Cdc42, [RH, Score=333, Expect=1e-118]} {Celegans: WBGene00000390, cdc-42, Caenorhabditis elegans Protein CDC-42 (cdc-42) mRNA, complete cds., [RH, Score=327, Expect=1e-116]} {Smed: dd_Smed_v6_698_0_1, [RH, Score=330, Expect=1e-117]} {Smes: dd_Smes_v1_77838_1_1, [RH, Score=330, Expect=1e-117]} {Smans: Smp_082810.2, [RH, Score=299, Expect=1e-105]} {UniRef: UniRef50_A0A0V1PGK9, Ubiquitinyl hydrolase 1 n=3 Tax=Trichinella TaxID=6333 RepID=A0A0V1PGK9_9BILA, [Score=329, Expect=1e-105]; UniRef50_A0A0V1K4V1, Ubiquitinyl hydrolase 1 n=3 Tax=Trichinella TaxID=6333 RepID=A0A0V1K4V1_TRIPS, [Score=327, Expect=1e-107]; UniRef50_A0A085NHS5, DNA helicase n=1 Tax=Trichuris suis TaxID=68888 RepID=A0A085NHS5_9BILA, [Score=326, Expect=1e-101]} {RNA1509_1073, RNA1509_41288}

Mlig009552.g1 {Length: 1824} {TRANSSPLICED} {Pfam: Ras family [PF00071.20, score=46.9]} {Human: ENSG00000070831, CDC42, cell division cycle 42 (GTP binding protein, 25kDa), [Score=111, Expect=2e-31]} {Dmel: FBgn0010341, Cdc42, Cdc42, [Score=107, Expect=3e-30]} {Celegans: WBGene00000390, cdc-42, Caenorhabditis elegans Protein CDC-42 (cdc-42) mRNA, complete cds., [Score=104, Expect=4e-29]} {Smed: dd_Smed_v6_698_0_1, [Score=104, Expect=5e-29]} {Smes: dd_Smes_v1_77838_1_1, [Score=104, Expect=6e-29]} {Smans: Smp_082810.2, [Score=89.4, Expect=2e-23]} {UniRef: UniRef50_A0A146MZE7, Cell division control protein 42 (Fragment) n=2 Tax=Fundulus heteroclitus TaxID=8078 RepID=A0A146MZE7_FUNHE, [Score=108, Expect=3e-28]} {RNA1509_1073}
18. MligTCv3c-15749.0 Mlig022844.g3, Mlig022844.g2 6.35

 Irradiation 

Mlig022844.g3 {Length: 1723} {TRANSSPLICED} {RNA1509_12068, RNA1509_1273, RNA1509_21266, RNA1509_9327}

Mlig022844.g2 {Length: 1732} {TRANSSPLICED} {RNA1509_14540, RNA1509_32933, RNA1509_51554, RNA1509_53645}
19. MligTCv3c-19673.0 Mlig012818.g5, Mlig012818.g4 6.34 Asexual_biased; Xins CA7

Mlig012818.g5 {Length: 2525} {SignalP} {Pfam: Eukaryotic-type carbonic anhydrase [PF00194.19, score=165.3]; Alpha-L-arabinofuranosidase B (ABFB) domain [PF05270.11, score=116.3]} {Human: ENSG00000168748, CA7, carbonic anhydrase VII, [Score=80.5, Expect=3e-16]; ENSG00000107159, CA9, carbonic anhydrase IX, [Score=79.0, Expect=6e-15]; ENSG00000074410, CA12, carbonic anhydrase XII, [Score=78.2, Expect=4e-15]; ENSG00000104267, CA2, carbonic anhydrase II, [Score=77.4, Expect=3e-15]} {Dmel: FBgn0038956, CG5379, , [Score=80.5, Expect=3e-16]} {Celegans: WBGene00000281, cah-3, Caenorhabditis elegans Protein CAH-3 (cah-3) mRNA, complete cds., [Score=81.6, Expect=3e-17]} {Smed: dd_Smed_v6_5784_0_1, [Score=80.1, Expect=1e-16]} {Smes: dd_Smes_v1_91269_1_1, [Score=80.1, Expect=2e-16]} {Smans: Smp_028670.1, [Score=87.8, Expect=1e-19]} {UniRef: UniRef50_UPI000674A52C, PREDICTED: carbonic anhydrase 14-like n=1 Tax=Biomphalaria glabrata TaxID=6526 RepID=UPI000674A52C, [Score=120, Expect=2e-26]} {RNA1509_899}

Mlig012818.g4 {Length: 2521} {SignalP} {Pfam: Eukaryotic-type carbonic anhydrase [PF00194.19, score=164.9]; Alpha-L-arabinofuranosidase B (ABFB) domain [PF05270.11, score=116.3]} {Human: ENSG00000168748, CA7, carbonic anhydrase VII, [Score=80.1, Expect=4e-16]; ENSG00000104267, CA2, carbonic anhydrase II, [Score=77.4, Expect=3e-15]; ENSG00000074410, CA12, carbonic anhydrase XII, [Score=77.4, Expect=7e-15]; ENSG00000107159, CA9, carbonic anhydrase IX, [Score=76.6, Expect=3e-14]} {Dmel: FBgn0038956, CG5379, , [Score=80.5, Expect=2e-16]} {Celegans: WBGene00000281, cah-3, Caenorhabditis elegans Protein CAH-3 (cah-3) mRNA, complete cds., [Score=81.6, Expect=3e-17]} {Smed: dd_Smed_v6_5784_0_1, [Score=80.9, Expect=9e-17]} {Smes: dd_Smes_v1_91269_1_1, [Score=80.5, Expect=1e-16]} {Smans: Smp_028670.1, [Score=87.4, Expect=1e-19]} {UniRef: UniRef50_UPI000674A52C, PREDICTED: carbonic anhydrase 14-like n=1 Tax=Biomphalaria glabrata TaxID=6526 RepID=UPI000674A52C, [Score=118, Expect=2e-25]} {RNA1509_899}
20. MligTCv3c-12033.2 Mlig008617.g2 6.29 MATN4 Mlig008617.g2 {Length: 2639} {SignalP} {Pfam: von Willebrand factor type A domain [PF00092.26, score=236.1]; von Willebrand factor type A domain [PF13519.4, score=101.4]; von Willebrand factor type A domain [PF13768.4, score=55.2]; VWA domain containing CoxE-like protein [PF05762.12, score=38.0]; Protein of unknown function (DUF1194) [PF06707.9, score=35.1]} {Human: ENSG00000124159, MATN4, matrilin 4, [RH, Score=125, Expect=1e-29]} {Celegans: WBGene00003497, mup-4, Caenorhabditis elegans Protein MUP-4 (mup-4) mRNA, complete cds., [Score=83.2, Expect=3e-16]} {Smed: dd_Smed_v6_2674_0_1, [Score=89.7, Expect=1e-18]} {Smes: dd_Smes_v1_99209_1_1, [Score=89.7, Expect=2e-18]} {UniRef: UniRef50_UPI0006982653, PREDICTED: uncharacterized protein LOC106155583 n=1 Tax=Lingula unguis TaxID=7574 RepID=UPI0006982653, [Score=139, Expect=3e-31]; UniRef50_UPI0005C34292, PREDICTED: collagen alpha-4(VI) chain-like, partial n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=UPI0005C34292, [Score=139, Expect=1e-31]} {RNA1509_317}
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